PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015931-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family AP2
Protein Properties Length: 333aa    MW: 37341.7 Da    PI: 7.9707
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015931-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43e-123490155
                    AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                           s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  SMil_00015931-RA_Salv 34 SVYRGVTRHRWTGRFEAHLWDkNCWNEaQNKKGRQGAYDDEEAAAHAYDLAALKYWG 90
                           78*******************99999999988888********************98 PP
2AP252.41.3e-16133184155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  SMil_00015931-RA_Salv 133 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 184
                            89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-83490IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1534100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-133599IPR001471AP2/ERF domain
SMARTSM003803.2E-1935104IPR001471AP2/ERF domain
PROSITE profilePS5103218.8083598IPR001471AP2/ERF domain
PRINTSPR003673.6E-63647IPR001471AP2/ERF domain
PfamPF008474.1E-12133184IPR001471AP2/ERF domain
CDDcd000183.81E-24133194No hitNo description
SuperFamilySSF541718.5E-18133194IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17134193IPR001471AP2/ERF domain
PROSITE profilePS5103218.189134192IPR001471AP2/ERF domain
SMARTSM003804.6E-25134198IPR001471AP2/ERF domain
PRINTSPR003673.6E-6174194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
LKPGNALNGV NTPGMKAKRT RKTIPRDSPP KRSSVYRGVT RHRWTGRFEA HLWDKNCWNE  60
AQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQKEILDME GQSREEYIGS  120
LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAIAYDMAAI  180
EYRGLNAVTN FDLSRYIKWL RPNNNNNNNK NAHSDPSLNL DSPGAITSPQ PPSDAALSQP  240
RPPTTATATS ALGLLLQSSK FKEMMEMTLA AECPSTPTQS DPPQCSIPDD IKTCFGSNDF  300
SDYNEQGDDI FGELFMQPMV QFDSMLNGED LVL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547685.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A4D8Z3J00.0A0A4D8Z3J0_SALSN; AP2-like factor, ANT lineage
STRINGXP_009793520.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-101ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]