PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

SMil_00015883-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HB-other

Protein Properties

Length: 255aa MW: 29399.1 Da PI: 9.1823

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015883-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.3	2.7e-08	195	239	13	54
HHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 13 eeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++L++ + + +yp+++e+++L +++gL+ +q+ +WF N+R + SMil_00015883-RA_Salv 195 DILKNWWHhhsNWPYPTEDEKADLVERTGLELKQINNWFINQRKR 239 55555555332469***************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.0E-13	6	50	IPR005540	KNOX1
Pfam	PF03790	2.5E-13	8	48	IPR005540	KNOX1
PROSITE profile	PS50071	12.082	180	243	IPR001356	Homeobox domain
SMART	SM00389	2.8E-11	182	247	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.03E-15	182	244	IPR009057	Homeodomain-like
CDD	cd00086	5.68E-11	183	241	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.8E-24	187	244	IPR009057	Homeodomain-like
Pfam	PF05920	5.3E-17	200	239	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	218	241	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MANSGQQLKA EIAGHPLCEQ LVAAHVACLR VATPMGELPN IEAQLCESQH LLRSYAQTAT 60 HSLSKHQSQQ LETLLRQYVL ALWSLKEQLH QHVNRCREIE HTFISLTGNA LYPQSFSHQL 120 AFHPNSLGAG ARVGQGSGAT MWEDDEEHSE RALVERVRKK LKIELKEGFK SRIQQVRDEI 180 LRKRRSGKLA DDTTDILKNW WHHHSNWPYP TEDEKADLVE RTGLELKQIN NWFINQRKRK 240 WQNSNASRSK NNTYS

Functional Description ? help Back to Top
Source	Description
UniProt	Possible developmental regulator.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding; up to 7-fold increase.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072032.1	3e-92	homeobox protein HD1
Swissprot	P46606	1e-88	HD1_BRANA; Homeobox protein HD1
TrEMBL	A0A4D8Y4D6	7e-91	A0A4D8Y4D6_SALSN; Uncharacterized protein
STRING	XP_004511615.1	6e-90	(Cicer arietinum)
STRING	AES94129	7e-90	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-90	KNOTTED-like homeobox of Arabidopsis thaliana 7

Publications ? help Back to Top
Boivin R,Hamel F,Beauseigle D,Bellemare G Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus. Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4 [PMID:7916213]