PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00015801-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 181aa MW: 20452 Da PI: 4.4384

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015801-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.5	1.3e-39	7	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+C+++C++apyf +q +++fa+vhk+FGasnv+kll++lpe+ r+da+ ++ yeA ar++dP+yG++++i++lqqq+ SMil_00015801-RA_Salv 7 SCGACKFLRRRCTEECIFAPYFSYDQaANHFAAVHKVFGASNVSKLLSHLPEHSRSDAAITISYEALARMEDPIYGCIAHIFALQQQV 94 6*********************9978******************************************************** PP DUF260 88 eqlkaelallk 98 ++l++e+++ + SMil_00015801-RA_Salv 95 ASLEEEIQMYG 105 ****98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.471	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-38	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MTGVSSSCGA CKFLRRRCTE ECIFAPYFSY DQAANHFAAV HKVFGASNVS KLLSHLPEHS 60 RSDAAITISY EALARMEDPI YGCIAHIFAL QQQVASLEEE IQMYGKAMAN LGINGESSNG 120 YFSREWENEA IMQTMMDPGT SDEIFEAYLL ERLLEQDYYL CQDNNLESLW TKYAAPPLSQ 180 W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-35	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	5e-35	3	101	7	104	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012858285.1	4e-70	PREDICTED: LOB domain-containing protein 33
Swissprot	Q9LHS8	3e-55	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A4D8ZBM4	1e-112	A0A4D8ZBM4_SALSN; Uncharacterized protein
STRING	Migut.F00757.1.p	1e-69	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-57	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]