PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015775-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 164aa    MW: 18038.3 Da    PI: 7.1289
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015775-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.37.9e-142880355
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
                           +l++ +r+++NRe+ArrsR+RK++ +eeL   v+eL  +N++    l   +++
  SMil_00015775-RA_Salv 28 DLRKRKRMISNRESARRSRLRKQKHMEELMAQVAELRRQNHQILTSLRATTQH 80
                           68999************************************988777666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-111975No hitNo description
SMARTSM003381.4E-172690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1852891IPR004827Basic-leucine zipper domain
PfamPF001702.4E-112975IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.04E-113080No hitNo description
CDDcd147022.70E-183181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDSSSGISSN SSGMQNSASE EDLQQTMDLR KRKRMISNRE SARRSRLRKQ KHMEELMAQV  60
AELRRQNHQI LTSLRATTQH HIAVESENAI LRAQEAELSH RLQSLVEIVG FTAAGNDGGY  120
HDQLDGGGSW NCLSQPIMMM AAAAASSFPA DAGPACMDLP RLLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKRKRMISNRESARRSRLRKQK
24248RRSRLRK
34249RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512945.12e-50bZIP transcription factor 44
SwissprotC0Z2L56e-39BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A4D9C3Q12e-76A0A4D9C3Q1_SALSN; Uncharacterized protein
STRINGXP_002512945.17e-50(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-33basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]