PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015576-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 392aa    MW: 43690.6 Da    PI: 8.109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015576-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.2e-141150342
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           ie +  r++tf kR++g++ K +E  +LCd+ +++ii+++
  SMil_00015576-RA_Salv 11 IEKEKSRNTTFKKRKEGLIRKVHEFTTLCDVSACMIIYGP 50
                           89999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.745149IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-20175IPR002100Transcription factor, MADS-box
CDDcd002661.35E-22271No hitNo description
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGRAKLKMEL IEKEKSRNTT FKKRKEGLIR KVHEFTTLCD VSACMIIYGP GPLQPEIWPP  60
QSPDQVRRII DLYKSKNSAG VKSFGVADFF HERKKQIEDE VAKLRRKNLE AKYPTRPELL  120
NLMNESQLRQ FHALLSDKAD GVRSRIESLR RKLHQSSSTS AENRCGRVDF EMAVMNQNQN  180
PQQQAVEMLL DHHRLQQMHA LNHHNSMMMH FEGGNFQLKR QFFFESASGY YAPPPPPLLP  240
QPRPYLLQAV MPPQLQYLPN QDDLIQYQMR NQNKDGGQDE DLMIDSSTSG AAAGLGGLGL  300
GASSPLAAGS GLGDGGWARG AAWSPTLVWA TAGGLGARWV ADSPETGGIS GVGRDELIWE  360
LGGNRGNRDE LIWDELMGLG NGDYLGLGWG LL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107KLRRKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552001.13e-71agamous-like MADS-box protein AGL14
TrEMBLA0A4D8ZJF72e-90A0A4D8ZJF7_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24572253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-19M-type_MADS family protein