PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00015526-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 500aa MW: 52448.4 Da PI: 7.1849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00015526-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SMil_00015526-RA_Salv 53 FVCEICNKGFQRDQNLQLHRRGH 75 89*******************88 PP
2	zf-C2H2	11.3	0.0011	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + SMil_00015526-RA_Salv 129 WKCDKCSKKYAVQSDWKAHSKIC 151 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	52	75	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.18E-7	52	75	No hit	No description
Pfam	PF12171	8.0E-5	53	75	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	53	75	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	53	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	94	124	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.4E-4	117	150	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.18E-7	124	149	No hit	No description
SMART	SM00355	150	129	149	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MNESAASGDS SSGNQTTPPK PTAKKKRNLP GMPDPDAEVI ALSPKTLMAT NRFVCEICNK 60 GFQRDQNLQL HRRGHNLPWK LRQRSSKDVK KRVYVCPEPS CVHHEPSRAL GDLTGIKKHF 120 CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCQC GTVFSRRDSY ITHRAFCDAL 180 ADESAKAPSA TEPAADADQD LEAGVSSLPP PPPEEDPSPP ADVAPSILPD NSNDNNSDHV 240 TELLDSTTAN PSSSQILEEL PNVTSLAARC SSSSCSGSSG SSSSNVFASL FASSTSSASL 300 QPQTTGFTDL FQSIARPDYT PDVVPSSSSE PVALCLAVNQ GSSIFGKAGQ ERRQYPPAPQ 360 PALSATALLQ KAAQIGAAAS NASLLRGLGI VSSSSSPNAS EEWSQQKMET SGGSLASGLG 420 LGLGCDSGSG LKELMLGTPS VFGPKHTTLD LLGLGMAASG GSTGGLSALM SSVNGGLDVS 480 AAAQPFDGRE YGNQEMGRSL

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MNESAASGDS SSGNQTTPPK PTAKKKRNLP GMPDPDAEVI ALSPKTLMAT NRFVCEICNK  60
GFQRDQNLQL HRRGHNLPWK LRQRSSKDVK KRVYVCPEPS CVHHEPSRAL GDLTGIKKHF  120
CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTREYKCQC GTVFSRRDSY ITHRAFCDAL  180
ADESAKAPSA TEPAADADQD LEAGVSSLPP PPPEEDPSPP ADVAPSILPD NSNDNNSDHV  240
TELLDSTTAN PSSSQILEEL PNVTSLAARC SSSSCSGSSG SSSSNVFASL FASSTSSASL  300
QPQTTGFTDL FQSIARPDYT PDVVPSSSSE PVALCLAVNQ GSSIFGKAGQ ERRQYPPAPQ  360
PALSATALLQ KAAQIGAAAS NASLLRGLGI VSSSSSPNAS EEWSQQKMET SGGSLASGLG  420
LGLGCDSGSG LKELMLGTPS VFGPKHTTLD LLGLGMAASG GSTGGLSALM SSVNGGLDVS  480
AAAQPFDGRE YGNQEMGRSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-33	125	189	3	67	Zinc finger protein JACKDAW
5b3h_F	8e-33	125	189	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022870585.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-164	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A4D9C4C8	0.0	A0A4D9C4C8_SALSN; Uncharacterized protein
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-104	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]