PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00015521-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 614aa    MW: 69110.8 Da    PI: 6.2522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00015521-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13436483355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+h   Er+RR++iN++f  L +l+P+      +K++K+++L +++eY+++L+
  SMil_00015521-RA_Salv 436 RNHVLSERKRREKINDRFMILGSLVPSG-----GKVDKVSVLDHTIEYLRELE 483
                            579999********************98.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4428203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-11436483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-11436478No hitNo description
SuperFamilySSF474595.5E-18436501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17437501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
LLLVEREQGS MMASGNQNQQ EMPQNLMMQL ALAVRSIQWS YAIFWSVSSR QPGMLEWCEG  60
YYNGDIKTRK TVQAAEVNMD QLGLQRSDQL RELYESLSLG ETKPQAKRPT AALSPEDLTD  120
AEWYFLVCMS FLFNTTDQGL PARTLATNQM IWLCNAHRAD TKFFSRSLLA KTIVCFPHLG  180
GVVELGTTEL VPEDPNLIRH ISSFLESPSV TVPVIPNLVF DNSCNHNGFN LERLDHANLP  240
EEGLDRLMDD PYMEICTPNN SDDFADNLLR EEMNLVEGVD AEASEIQSWP VMEDAVSNCL  300
NNSVNSSDCV SQSEGEPETI IPHSDGKKEN KSCMEECNQK TASEFQGNDV RYQSVISNLL  360
KSSHQLILGP YIRNGSRESS FVFWRKHGAP GQQRGTPQKL LKKVLFEVAR MHQSCRADSE  420
RQHNSCSKRE ADEIDRNHVL SERKRREKIN DRFMILGSLV PSGGKVDKVS VLDHTIEYLR  480
ELERRVEELE SYKKAMERES TTHSKSQDAI ERTSDNYGND NNPKKPATNK RKAACHNHKD  540
RTGAENIKAR LRDSSSPADN ITVTVSDKVA LIETIQSSTN NGTLSIIVNA KCKGLKSPSA  600
VVIRQALQKV IRKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-113920524192Transcription factor MYC3
4rqw_B4e-113920524192Transcription factor MYC3
4rs9_A4e-113920524192Transcription factor MYC3
4yz6_A4e-113920524192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441446ERKRRE
2442447RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574640.0KP257464.1 Salvia miltiorrhiza clone 31 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080947.10.0transcription factor EGL1 isoform X1
TrEMBLA0A0H3YBR70.0A0A0H3YBR7_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.E01090.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-119bHLH family protein