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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00015041-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 219aa MW: 24711 Da PI: 9.8333 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.1 | 1e-33 | 2 | 75 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e+ewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +++lvg+kktLvfy+grapkgekt+Wvmheyrl SMil_00015041-RA_Salv 2 GEREWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-GSALVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 75 578**************************************.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 41.76 | 1 | 96 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-39 | 2 | 96 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-16 | 6 | 75 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGEREWYFFS LRDRKYPTGL RTNRATEAGY WKTTGKDKEI FRGSALVGMK KTLVFYRGRA 60 PKGEKTNWVM HEYRLHNKLS FKPSKEEWVV CRIFQKTAAI KRPQQTPPSP PDDSPSFGMP 120 VPPSPLQNYN TNDANVISSW NAADAALSSW PLSLSMNSLL LTALQLRGHQ PDNYGLMPFG 180 NHEFGASSFN MGSTSGVVDS LPQPLPPEQP PYNVDSNIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 1 | 102 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 1 | 102 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 1 | 102 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 1 | 102 | 68 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-32 | 1 | 102 | 68 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 1 | 102 | 68 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096994.1 | 1e-94 | NAC domain-containing protein 92 | ||||
TrEMBL | A0A2G9HGW4 | 3e-90 | A0A2G9HGW4_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0015s03700.1 | 6e-75 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 2e-59 | NAC domain containing protein 58 |