PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014867-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 290aa    MW: 32748.7 Da    PI: 8.8741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014867-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-33622011128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 
                            lp+G++F+P+d+e++ e+L++kv  ++      +   +    +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+
  SMil_00014867-RA_Salv  62 LPAGVKFDPSDQEIL-EHLEAKVMCDTrkmhplI---DefipTIQGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRK 144
                            799***********9.99****999985554442...144333666557**********.566677888******************7 PP

                    NAM  78 tk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            ++     + +W++tgk++++   +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+ 
  SMil_00014867-RA_Salv 145 VHnadggETRWHKTGKTRPISG-GGSVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHS 201
                            5546555678**********99.999***********66589**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3852220IPR003441NAC domain
PROSITE profilePS5100533.94662220IPR003441NAC domain
PfamPF023651.3E-1463200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
LQRREMTWSN SDEETALRIS ENETSIATST THPFQTLICP SCGQTIKLQD YKSSGIQDLP  60
GLPAGVKFDP SDQEILEHLE AKVMCDTRKM HPLIDEFIPT IQGENGICYT HPEKLPGVSK  120
DGQVRHFFHR PSKAYTTGTR KRRKVHNADG GETRWHKTGK TRPISGGGSV KGYKKILVLY  180
TNYGRQRKPE KTNWVMHQYH SGENEEERDG EFVLSKVFYQ TQPRQCLSSK EAVSTEASFV  240
KNTSDYYIPT LVSYQSVNRD GSTPVIPDLV AHGERSSSFI RLPSPASKDK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096365.11e-147NAC domain-containing protein 73
SwissprotO494591e-111NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A4D8XU261e-167A0A4D8XU26_SALSN; Uncharacterized protein
STRINGXP_002509421.11e-134(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-114NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]