PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 290aa MW: 32748.7 Da PI: 8.8741

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014867-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.7	1.4e-33	62	201	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G++F+P+d+e++ e+L++kv ++ + + +i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+ SMil_00014867-RA_Salv 62 LPAGVKFDPSDQEIL-EHLEAKVMCDTrkmhplI---DefipTIQGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRK 144 799*********9.99999985554442...144333666557******.566677888**************7 PP NAM 78 tk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ + +W++tgk++++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+ SMil_00014867-RA_Salv 145 VHnadggETRWHKTGKTRPISG-GGSVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHS 201 5546555678******99.999*******66589************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-38	52	220	IPR003441	NAC domain
PROSITE profile	PS51005	33.946	62	220	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	63	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
LQRREMTWSN SDEETALRIS ENETSIATST THPFQTLICP SCGQTIKLQD YKSSGIQDLP 60 GLPAGVKFDP SDQEILEHLE AKVMCDTRKM HPLIDEFIPT IQGENGICYT HPEKLPGVSK 120 DGQVRHFFHR PSKAYTTGTR KRRKVHNADG GETRWHKTGK TRPISGGGSV KGYKKILVLY 180 TNYGRQRKPE KTNWVMHQYH SGENEEERDG EFVLSKVFYQ TQPRQCLSSK EAVSTEASFV 240 KNTSDYYIPT LVSYQSVNRD GSTPVIPDLV AHGERSSSFI RLPSPASKDK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096365.1	1e-147	NAC domain-containing protein 73
Swissprot	O49459	1e-111	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A4D8XU26	1e-167	A0A4D8XU26_SALSN; Uncharacterized protein
STRING	XP_002509421.1	1e-134	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2875	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-114	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]