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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014745-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23467.4 Da PI: 9.253 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.1e-16 | 33 | 78 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++ Ed l ++v+++G+++W+ Ia+ ++ gR++k+c++rw + SMil_00014745-RA_Salv 33 RGPWSAAEDAVLTELVNKFGPRNWSMIAAGIP-GRSGKSCRLRWCNQ 78 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 85 | 129 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd +++a+k +G++ W++Ia+ ++ gRt++ +k++w++ SMil_00014745-RA_Salv 85 RKPFTDEEDRTIIEAHKVHGNK-WASIAKLLP-GRTDNAIKNHWNST 129 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.449 | 28 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.83E-31 | 31 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 32 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 33 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 34 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-13 | 35 | 77 | No hit | No description |
PROSITE profile | PS51294 | 25.934 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-17 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 85 | 129 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-13 | 87 | 130 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 87 | 132 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
LMDGDVIDAA ERDEGGAMEV EAEDGGGAGA KVRGPWSAAE DAVLTELVNK FGPRNWSMIA 60 AGIPGRSGKS CRLRWCNQLN PYLKRKPFTD EEDRTIIEAH KVHGNKWASI AKLLPGRTDN 120 AIKNHWNSTL RRMHLKSKPD SSQNCTTEFM RASSDATSSG PALTLFNPSD EMDIGRWKIN 180 QSNQKTKLRP LQTVLSNNHR HFYRMEPLSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-42 | 32 | 132 | 6 | 106 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059422 | 0.0 | KF059422.1 Salvia miltiorrhiza MYB-related transcription factor (MYB68) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076754.1 | 2e-67 | transcription factor MYB25 | ||||
Swissprot | Q42575 | 7e-50 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A059PSQ5 | 1e-124 | A0A059PSQ5_SALMI; MYB-related transcription factor | ||||
STRING | Migut.F00722.1.p | 4e-60 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12883 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 2e-59 | myb domain protein 109 |
Publications ? help Back to Top | |||
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