PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014719-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | RAV | ||||||||
Protein Properties | Length: 259aa MW: 29383.4 Da PI: 9.249 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.2 | 9.6e-09 | 19 | 65 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++kGV + +g W A+I+ + +r++lg+f ++ Aa a++ a+ kl+ SMil_00014719-RA_Salv 19 RFKGVVPQP-NGHWGAQIYA------NqQRIWLGTFKSETSAAIAYDSAAMKLR 65 589998777.8******999......44**********99***********997 PP | |||||||
2 | B3 | 89.1 | 3.5e-28 | 132 | 218 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+ltpsdv+k++rlv+pk++a +h + + e++++l ++de W+++++y+k+s+++v+t+GW++Fvk++gL+++D+v F+ SMil_00014719-RA_Salv 132 FHKELTPSDVGKLNRLVIPKRYAVKHfpDVPGEQQVQLEVYDEAMSLWKFRYCYWKSSQSFVFTRGWNRFVKDKGLRSNDTVAFYTY 218 89*************************9555568899***********************************************943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.1E-19 | 19 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.40E-20 | 19 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-17 | 19 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-14 | 19 | 75 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.161 | 19 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-4 | 19 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-30 | 128 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-26 | 130 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-25 | 131 | 216 | No hit | No description |
PROSITE profile | PS50863 | 12.788 | 132 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-25 | 132 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-20 | 132 | 226 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEEEMVSAAR EVGGWRRERF KGVVPQPNGH WGAQIYANQQ RIWLGTFKSE TSAAIAYDSA 60 AMKLRHGDSH TNFPPTALEL GFQSQLSTEA VLNMIRDGSY PSHLSEFLRK QGELEIGLNP 120 SSLYGCSCSL LFHKELTPSD VGKLNRLVIP KRYAVKHFPD VPGEQQVQLE VYDEAMSLWK 180 FRYCYWKSSQ SFVFTRGWNR FVKDKGLRSN DTVAFYTYQT PHLGKSFLVI HHVAAQAQSS 240 PITITTPNKG FKLFGVQID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 8e-27 | 131 | 215 | 13 | 100 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086824.1 | 1e-110 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C6P5 | 8e-79 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A2Z7CBN5 | 1e-112 | A0A2Z7CBN5_9LAMI; Uncharacterized protein | ||||
STRING | VIT_11s0037g00010.t01 | 4e-88 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 3e-81 | RAV family protein |