PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014624-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 239aa    MW: 25838.7 Da    PI: 8.6905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014624-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000292114123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y+C+ C++sFs+   L  H  +H
  SMil_00014624-RA_Salv  92 YTCKTCNRSFSSFQALGGHRASH 114
                            9***********99999998887 PP
2zf-C2H213.30.00025169191123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++Cg  F +   L  H+r+H
  SMil_00014624-RA_Salv 169 HECSYCGAEFASGQALGGHMRKH 191
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-891114No hitNo description
PROSITE profilePS5015710.76292119IPR007087Zinc finger, C2H2
PfamPF139121.8E-1192116IPR007087Zinc finger, C2H2
SMARTSM003550.05892114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-8164191No hitNo description
Gene3DG3DSA:3.30.160.602.7E-4167193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-12168193IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72169196IPR007087Zinc finger, C2H2
SMARTSM003550.013169191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
METATEEAAA TPCLNTDLIT KGKRTKRERP NSPVSFTITP PPRAAASSEE STTTEEADTA  60
RCLILLSRGH FNNNRRSDAA TTSYGGGAAC MYTCKTCNRS FSSFQALGGH RASHKKPRNE  120
KRYAIFSDDE DLTSPSSSSR NKFSPTSLSL QLSSVSTTTT TAVKSPRVHE CSYCGAEFAS  180
GQALGGHMRK HRGATAPSPR GVDEVEAGKW LSLDLNLPAP EDERERSPNR IPPPLLLHP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077260.11e-70zinc finger protein ZAT5
SwissprotQ681X42e-40ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A4D9AT169e-93A0A4D9AT16_SALSN; Uncharacterized protein
STRINGMigut.F01919.1.p1e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.14e-33C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]