PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014607-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NF-YB | ||||||||
Protein Properties | Length: 178aa MW: 19467.8 Da PI: 8.2001 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 185.5 | 4.1e-58 | 27 | 124 | 1 | 98 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 vreqdrflPian+srimkk lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl+ SMil_00014607-RA_Salv 27 VREQDRFLPIANISRIMKKGLPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLN 114 69************************************************************************************** PP NF-YB 89 kyrelegekk 98 +yre+eg++k SMil_00014607-RA_Salv 115 RYREMEGDTK 124 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-54 | 22 | 137 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.95E-41 | 30 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.4E-28 | 33 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-20 | 61 | 79 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 64 | 80 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.1E-20 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 1.1E-20 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MAEQGAPGSP VGGSHDSGGD QSPRSGVREQ DRFLPIANIS RIMKKGLPPN GKIAKDAKET 60 VQECVSEFIS FITSEASDKC QREKRKTING DDLLWAMATL GFEDYIDPLK VYLNRYREME 120 GDTKGSAKGT DGSTKKDGLQ QQIPNSQSTF PATSKASSPG FFFTRHELWK YSVSTLPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-47 | 27 | 118 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-47 | 27 | 118 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094723.1 | 1e-95 | nuclear transcription factor Y subunit B-8 | ||||
Swissprot | Q8VYK4 | 7e-79 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0V0HS79 | 6e-84 | A0A0V0HS79_SOLCH; Putative nuclear transcription factor Y subunit B-10-like | ||||
TrEMBL | A0A1B0T703 | 4e-84 | A0A1B0T703_CHRMO; NF-Y protein (Fragment) | ||||
TrEMBL | A0A2U1QNJ1 | 4e-84 | A0A2U1QNJ1_ARTAN; NF-Y protein | ||||
STRING | Migut.J00411.1.p | 2e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 3e-81 | nuclear factor Y, subunit B8 |
Publications ? help Back to Top | |||
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