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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014556-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19811.3 Da PI: 9.6579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.4 | 2e-34 | 26 | 100 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s ++++vg+kktLv+y+grap+g +tdWvmheyrl SMil_00014556-RA_Salv 26 SKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-QTRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 100 4667**************************************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.753 | 1 | 124 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-40 | 25 | 124 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-18 | 25 | 100 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MCYGTLEYAW IANIRRILQG KSLLPSKDLE WYFFSPRDRK YPNGSRTNRA TKAGYWKATG 60 KDRKVNSQTR AVGMKKTLVY YRGRAPHGAR TDWVMHEYRL DDRECDTPSS GLQDAYALCR 120 VFKKSLNIPK VGENYVTHPS STPNYEDPPD PSWPHYLSEE AFAFTNNPYQ A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-35 | 23 | 124 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-35 | 23 | 124 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-35 | 23 | 124 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-35 | 23 | 124 | 61 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swm_B | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swm_C | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swm_D | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swp_A | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swp_B | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swp_C | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
3swp_D | 9e-35 | 23 | 125 | 64 | 169 | NAC domain-containing protein 19 |
4dul_A | 9e-35 | 23 | 124 | 61 | 165 | NAC domain-containing protein 19 |
4dul_B | 9e-35 | 23 | 124 | 61 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835579.1 | 4e-79 | PREDICTED: NAC domain-containing protein 86 | ||||
Swissprot | A4VCM0 | 2e-57 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A022RF03 | 5e-79 | A0A022RF03_ERYGU; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K00745.1.p | 2e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA30705 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-63 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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