PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014538-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 693aa    MW: 76445.9 Da    PI: 6.809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014538-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.7e-521452811128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp+GfrF+Ptdeelv++yL+ k++g++  + evi+e+d++k+ePwdLp+   +k ++ ew+fF++rdkky++g r+nrat++gyWkat
  SMil_00014538-RA_Salv 145 LPKGFRFRPTDEELVSHYLRLKINGHHSAV-EVIPEIDVCKWEPWDLPAlsVIKCDDPEWFFFCPRDKKYPNGYRSNRATEAGYWKAT 231
                            799************************888.99***************4447777999****************************** PP

                    NAM  87 gkdkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++++s+        +++++glkktLvfy+grapkge+t+W+mheyr+
  SMil_00014538-RA_Salv 232 GKDRTIKSRksspsghsHSHVIGLKKTLVFYRGRAPKGERTNWIMHEYRA 281
                            ********9777777666667***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-61139304IPR003441NAC domain
PROSITE profilePS5100558.252145304IPR003441NAC domain
PfamPF023652.1E-27146280IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MKRNDLRNLV ALILSPALGL AVLSRRWRGL CVVWCCVCWA ESSGIGMTAS LLPTIRPNTG  60
EREAPKCAEE RESYGTKGSG GASPSPRRKA EALILTAATS LGEVDQRRRS SPGMMESRRR  120
RLGLIAVANF LALVNVGGAM KLEALPKGFR FRPTDEELVS HYLRLKINGH HSAVEVIPEI  180
DVCKWEPWDL PALSVIKCDD PEWFFFCPRD KKYPNGYRSN RATEAGYWKA TGKDRTIKSR  240
KSSPSGHSHS HVIGLKKTLV FYRGRAPKGE RTNWIMHEYR ATEPDLDGTG PGQGDYVLCR  300
LFHKADERLD NLKCDGVEHT VSVPSTDKSS PDDVSSDVFR EPAMLDMLMV KEPGEVKKWF  360
TDPADCLTPT NLAPVESCAS DCIDHSGEEA AMEVSLPLQV HSMSEEATHN QFDDKGLGDF  420
QSHSYADLVA PIGSPFAADF GYERNGLHFQ DGTSEPDASL SELLEGLQNH GNCFYDESTS  480
HKTFDPSGSF VPSHIDDLTQ APFAFCKDEK SPSFSRVQSP DHSRSCYASE EVDSSVNTVG  540
GSFLRRIETF CHSNSTKDND TPVSETGIKI RSRQPRNPPS LMNFTSQGTA PRRLRLWFGP  600
RPESNYSDRS KEDESQSLNE QDADIAHKSD PNSAAKHGQN SSVRMPSPKI SGLLSVRGGS  660
GYMKAYAAGI YIAITVSVLL GIWICPKLHA LQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-4514430419168NAC domain-containing protein 19
3swm_B2e-4514430419168NAC domain-containing protein 19
3swm_C2e-4514430419168NAC domain-containing protein 19
3swm_D2e-4514430419168NAC domain-containing protein 19
3swp_A2e-4514430419168NAC domain-containing protein 19
3swp_B2e-4514430419168NAC domain-containing protein 19
3swp_C2e-4514430419168NAC domain-containing protein 19
3swp_D2e-4514430419168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106120RRRSSPGMMESRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070419.10.0protein NTM1-like 9
RefseqXP_011070420.10.0protein NTM1-like 9
TrEMBLA0A2Z4K5470.0A0A2Z4K547_TECGR; NAC2 protein (Fragment)
STRINGMigut.E00715.1.p1e-176(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14316710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.31e-108NAC transcription factor-like 9