PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014520-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24028 Da PI: 10.9562 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.3 | 3.5e-22 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i ++ r+vtfskRr+g++KKA ELSvLC++++a+iifs g+ y + SMil_00014520-RA_Salv 20 LIADENARTVTFSKRRAGLFKKATELSVLCGTQIALIIFSLGGRAYSF 67 5889999*********************************99999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.203 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-29 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-26 | 11 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.72E-31 | 12 | 81 | No hit | No description |
PRINTS | PR00404 | 2.2E-18 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-22 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-18 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-18 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MAPPQAKKKS QGRRKIDMKL IADENARTVT FSKRRAGLFK KATELSVLCG TQIALIIFSL 60 GGRAYSFGHP DVESIIGRFF NRNPTPTPQE SAHAMRIRAS MLQEIKAQFD QKSEELETKK 120 KRTKEIEAAL ESSSYQTTEE GLDGLDIHQL QQLKEKMVRL REQMRRLANA PRANAVVAPA 180 VPGPVGAKSA RSVPPLIWQK LGKMKLVLLQ FHLIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1egw_A | 7e-16 | 12 | 91 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 7e-16 | 12 | 91 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 7e-16 | 12 | 91 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 7e-16 | 12 | 91 | 1 | 77 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_B | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_I | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3kov_J | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_A | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_B | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_C | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_D | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_I | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
3p57_J | 7e-16 | 12 | 91 | 1 | 77 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827635.1 | 2e-75 | PREDICTED: uncharacterized protein LOC105948920 | ||||
TrEMBL | A0A4D8YFR6 | 5e-95 | A0A4D8YFR6_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.I00404.1.p | 2e-77 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15656 | 6 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-30 | AGAMOUS-like 62 |