PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014520-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24028 Da    PI: 10.9562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014520-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.5e-222067249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            i ++  r+vtfskRr+g++KKA ELSvLC++++a+iifs  g+ y +
  SMil_00014520-RA_Salv 20 LIADENARTVTFSKRRAGLFKKATELSVLCGTQIALIIFSLGGRAYSF 67
                           5889999*********************************99999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.2031171IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-291170IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-261186IPR002100Transcription factor, MADS-box
CDDcd002654.72E-311281No hitNo description
PRINTSPR004042.2E-181333IPR002100Transcription factor, MADS-box
PfamPF003192.1E-222167IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-183348IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-184869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAPPQAKKKS QGRRKIDMKL IADENARTVT FSKRRAGLFK KATELSVLCG TQIALIIFSL  60
GGRAYSFGHP DVESIIGRFF NRNPTPTPQE SAHAMRIRAS MLQEIKAQFD QKSEELETKK  120
KRTKEIEAAL ESSSYQTTEE GLDGLDIHQL QQLKEKMVRL REQMRRLANA PRANAVVAPA  180
VPGPVGAKSA RSVPPLIWQK LGKMKLVLLQ FHLIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A7e-161291177MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B7e-161291177MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C7e-161291177MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D7e-161291177MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A7e-161291177Myocyte-specific enhancer factor 2A
3kov_B7e-161291177Myocyte-specific enhancer factor 2A
3kov_I7e-161291177Myocyte-specific enhancer factor 2A
3kov_J7e-161291177Myocyte-specific enhancer factor 2A
3p57_A7e-161291177Myocyte-specific enhancer factor 2A
3p57_B7e-161291177Myocyte-specific enhancer factor 2A
3p57_C7e-161291177Myocyte-specific enhancer factor 2A
3p57_D7e-161291177Myocyte-specific enhancer factor 2A
3p57_I7e-161291177Myocyte-specific enhancer factor 2A
3p57_J7e-161291177Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827635.12e-75PREDICTED: uncharacterized protein LOC105948920
TrEMBLA0A4D8YFR65e-95A0A4D8YFR6_SALSN; MADS-box transcription factor, plant
STRINGMigut.I00404.1.p2e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-30AGAMOUS-like 62