PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014385-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 1027aa    MW: 113922 Da    PI: 5.1376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014385-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-164995148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g WT+eEde+l  av+++ g++Wk+Ia+++   R + qc +rwqk+l
  SMil_00014385-RA_Salv 49 KGQWTAEEDEILRMAVQRFKGKNWKKIAECFK-DRADVQCLHRWQKVL 95
                           799****************************9.************986 PP
2Myb_DNA-binding61.22.1e-19101147148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            +g+W++eEd+ +v++v ++G++ W+tIa++++ gR +kqc++rw+++l
  SMil_00014385-RA_Salv 101 KGPWSKEEDDVIVELVDKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 147
                            79******************************.*************97 PP
3Myb_DNA-binding26.21.8e-08153185135
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                            + +WT+eE++ l++a++ +G++ W+   + ++ gR
  SMil_00014385-RA_Salv 153 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GR 185
                            579*******************.******999.88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4494495IPR017930Myb domain
SMARTSM007171.2E-124897IPR001005SANT/Myb domain
PfamPF002496.1E-144995IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2150103IPR009057Homeodomain-like
SuperFamilySSF466891.29E-1450105IPR009057Homeodomain-like
CDDcd001671.02E-115295No hitNo description
PROSITE profilePS5129433.18996151IPR017930Myb domain
SuperFamilySSF466894.49E-2798189IPR009057Homeodomain-like
SMARTSM007179.8E-18100149IPR001005SANT/Myb domain
PfamPF002499.2E-18101147IPR001005SANT/Myb domain
CDDcd001671.64E-15103147No hitNo description
Gene3DG3DSA:1.10.10.609.7E-28104150IPR009057Homeodomain-like
PROSITE profilePS500907.921148185IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-13151186IPR009057Homeodomain-like
SMARTSM007170.016152196IPR001005SANT/Myb domain
PfamPF002497.0E-7153185IPR001005SANT/Myb domain
CDDcd001675.21E-6155185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1027 aa     Download sequence    Send to blast
LAYADYLVFQ VNMKSDRITN TPAEGSGDGL QRARPSHGRK SGPTRRSTKG QWTAEEDEIL  60
RMAVQRFKGK NWKKIAECFK DRADVQCLHR WQKVLNPELV KGPWSKEEDD VIVELVDKYG  120
PKKWSTIAQH LPGRIGKQCR ERWHNHLNPN INKEAWTQEE ELALIRAHQI YGNKWAELTK  180
FLPGRVTFQY QGTPLVSQSN QSAVSSSKAQ QSTEEDKNGV EVEEASGCSQ GSVFPSTSQP  240
VNNTTNRTTH HDEDYRATAG SPSIPCPEDY PPAFREVTYA TLEAPCEMDA KFVQPDTSLD  300
WRTFSGKDWQ ANTDDPDMSM LDLGQETSGI FMQSLNESEN HDAMTFPMET YMHLDDSISM  360
VKMGVVSDTP NLVTNADCNV VYPEVGHGGH PSVNDICDVH ESENILVHNY SNFEMPYVPP  420
SMLGASSSQP VHVPAQLPPA DGPVLLNSYP DQFDYSTHVN GEPESISPRT LDEFGYANES  480
NCSPREDNFD EAKRSSKLVP ANDFVLQPLN VDSPCCSSKD KDSVEQQDSG ALFYEHPRFP  540
SLDIPFFSCD LIQSCSDMHQ EYSPLGIRQL MLSSMTPLKL WDSPSRDGSP VAALKSAAKS  600
FTSTPSILRK RHRELLSPLS EKRDEKKLEC SRPESVSNMT NEISCLEVIF NECMHDQKGL  660
HGQGDFIEKE NVTHAFEEAK NEGNQSHLVA GSRNSKNDNI VSGCSGKQTE QSVVEEVKTN  720
TVDEDVMDKA KESSGILVEH DMNDILFLSP DSFGIKSDRA NGPSAKALGN QYTRRIESIS  780
KPGPVLSSAE TSCFSVLCSP RLCTKKDDTS SRLCISASLQ SSSPSEKKTG SSGKGITSEN  840
NGMYCGTPFK RNMESPSPWK SSPWFVNTFV PGPRVDTDIT IEDFGYLSPG DRSYDAIGLM  900
KQLGEQTAGA FADAHKVLGD ETPESLLKGK CFTNEQREKE NEHSPNTQAE HHSLSASNLM  960
MLCCLSFSYY ELHVNVSLRI FTRGNALQTE RRALDFSECG TPGKEARKSS SSSGVATPSS  1020
YLLKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-57491894142MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-57491894142MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081822.10.0transcription factor MYB3R-1
RefseqXP_011081823.10.0transcription factor MYB3R-1
RefseqXP_020550835.10.0transcription factor MYB3R-1
TrEMBLA0A4D9AHW30.0A0A4D9AHW3_SALSN; Uncharacterized protein
STRINGMigut.A00232.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-173Homeodomain-like protein