PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014289-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 316aa    MW: 35639.1 Da    PI: 4.8398
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014289-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.5e-1886139356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ +q++ Le+ Fe ++++  +++ +LA++lgL+ rq+ vWFqNrRa+ k
  SMil_00014289-RA_Salv  86 KKRRLSVDQVQFLERSFEVENKLEPDRKLQLANELGLQPRQIAVWFQNRRARCK 139
                            566899**********************************************99 PP
2HD-ZIP_I/II121.64e-3985175191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrls +qv++LE+sFe e+kLep+rK +la+eLglqprq+avWFqnrRAR ktk+lE++ye+L+++y++lk + + L ke+e+L+
  SMil_00014289-RA_Salv  85 EKKRRLSVDQVQFLERSFEVENKLEPDRKLQLANELGLQPRQIAVWFQNRRARCKTKHLETEYETLHSSYKSLKMDYDYLVKENEKLK 172
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eel 91 
                            +e+
  SMil_00014289-RA_Salv 173 AEV 175
                            987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-1862141IPR009057Homeodomain-like
PROSITE profilePS5007116.64981141IPR001356Homeobox domain
SMARTSM003891.6E-1884145IPR001356Homeobox domain
PfamPF000464.3E-1586139IPR001356Homeobox domain
CDDcd000868.63E-1886142No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1893140IPR009057Homeodomain-like
PRINTSPR000311.9E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000311.9E-5121137IPR000047Helix-turn-helix motif
PfamPF021831.1E-11141179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAGREFANSG GGALDLSKKM KTCGHDRPLD SVFASAPSNS FLGPGAMVSF GAVGRDNSSG  60
NSFYQSFEMQ ENGEEYLDDY FSQPEKKRRL SVDQVQFLER SFEVENKLEP DRKLQLANEL  120
GLQPRQIAVW FQNRRARCKT KHLETEYETL HSSYKSLKMD YDYLVKENEK LKAEVLHLKH  180
DGTAQDVEHA SSGESDTKEL SEAIPVSTDE EDHKVSVSTS KNDEQSSTKS DVTNEDSPRL  240
TDGIHHPLFV KSGESPHDFD PSQSVLSLHG EDCLNEEMLQ RAYVFPKIED AYCHPHATSC  300
GYGFSVEDHA FNFWSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087214.11e-105homeobox-leucine zipper protein HAT5
TrEMBLA0A4D9BRV60.0A0A4D9BRV6_SALSN; Homeobox-leucine zipper protein
STRINGMigut.D01856.1.p1e-102(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-39homeobox 1