PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00014153-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 619aa MW: 71026.5 Da PI: 8.7307

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00014153-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.1e-21	52	126	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+ + ++s+ +g +++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHe SMil_00014153-RA_Salv 52 EFYSSYATQIGFKIRIGQLYRSRVDGAVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVLANIKKEHNHE 125 6*************************************987..............589*************************9 PP FAR1 89 l 89 + SMil_00014153-RA_Salv 126 F 126 8 PP
2	FAR1	66.8	5.4e-21	204	279	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfY +YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnHe SMil_00014153-RA_Salv 204 KFYYTYAASAGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHE 277 6************************************9998..............4899************************9 PP FAR1 89 la 90 + SMil_00014153-RA_Salv 278 FE 279 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-17	52	126	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.7E-16	204	278	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.522	505	541	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.8E-8	511	538	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-7	516	543	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence Send to blast
MNREELGNIM TVRTKPAALV IPKSNGHRED VGQSKMEPHV GLEFDSAEEA QEFYSSYATQ 60 IGFKIRIGQL YRSRVDGAVI SRRFVCSKEG FQTNSRTGCP AFIRVQKVDS GKWVLANIKK 120 EHNHEFEASG ELCPPRIQRK TIPTPRSSSA GGASRTGIRS HEDDSPTGVV DMKRLKKEEM 180 DGMVGPVAEP QKGLEFNSAN EAYKFYYTYA ASAGFRIRIG QLFRSKHDGS ITSRRFVCSK 240 EGHQHPSRVG CGAYMRIQRQ ESGRWVVDRL QKEHNHEFET PTDLSRTVTV ASKGGYREEG 300 SNMLENLDLV ETNGGLSLVK RVSESNISSA WYPLLLEYDY ETCVFQSQTA NEFDSAWDML 360 MEKYNLRENS WFKDMHRTRK SWVPLYLKGT FFAGIPVDGS LKSYFSTLLT SQTPLNEFVV 420 RYEKALEQRR EEERKEDFNS FNLQSILHTK DPIEEQCRRL YTITMFKVFQ KELLECYSYV 480 GMKINVEGAI SRYMVQKCGN GDERKTVAFN ASNLNINCSC KMFEFEGVLC RHALKVLQIM 540 NIRELPSRYI LHRWSKNAKY GILRDADSAG GAQDFKALML WSLREEARNY IEAGAASLER 600 YKLAFEIMQE GRRNLCWQN

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence Send to blast

MNREELGNIM TVRTKPAALV IPKSNGHRED VGQSKMEPHV GLEFDSAEEA QEFYSSYATQ  60
IGFKIRIGQL YRSRVDGAVI SRRFVCSKEG FQTNSRTGCP AFIRVQKVDS GKWVLANIKK  120
EHNHEFEASG ELCPPRIQRK TIPTPRSSSA GGASRTGIRS HEDDSPTGVV DMKRLKKEEM  180
DGMVGPVAEP QKGLEFNSAN EAYKFYYTYA ASAGFRIRIG QLFRSKHDGS ITSRRFVCSK  240
EGHQHPSRVG CGAYMRIQRQ ESGRWVVDRL QKEHNHEFET PTDLSRTVTV ASKGGYREEG  300
SNMLENLDLV ETNGGLSLVK RVSESNISSA WYPLLLEYDY ETCVFQSQTA NEFDSAWDML  360
MEKYNLRENS WFKDMHRTRK SWVPLYLKGT FFAGIPVDGS LKSYFSTLLT SQTPLNEFVV  420
RYEKALEQRR EEERKEDFNS FNLQSILHTK DPIEEQCRRL YTITMFKVFQ KELLECYSYV  480
GMKINVEGAI SRYMVQKCGN GDERKTVAFN ASNLNINCSC KMFEFEGVLC RHALKVLQIM  540
NIRELPSRYI LHRWSKNAKY GILRDADSAG GAQDFKALML WSLREEARNY IEAGAASLER  600
YKLAFEIMQE GRRNLCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071525.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q3E7I5	1e-117	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A103XIS0	0.0	A0A103XIS0_CYNCS; Uncharacterized protein
TrEMBL	A0A2H5N7E0	0.0	A0A2H5N7E0_CITUN; Uncharacterized protein (Fragment)
STRING	Migut.G00251.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	1e-119	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]