PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00014153-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | FAR1 | ||||||||
Protein Properties | Length: 619aa MW: 71026.5 Da PI: 8.7307 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.9 | 5.1e-21 | 52 | 126 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+ + ++s+ +g +++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHe SMil_00014153-RA_Salv 52 EFYSSYATQIGFKIRIGQLYRSRVDGAVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVDSGKWVLANIKKEHNHE 125 6***************************************987..............589***************************9 PP FAR1 89 l 89 + SMil_00014153-RA_Salv 126 F 126 8 PP | |||||||
2 | FAR1 | 66.8 | 5.4e-21 | 204 | 279 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 kfY +YA ++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w+v++l++eHnHe SMil_00014153-RA_Salv 204 KFYYTYAASAGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAYMRIQRQESGRWVVDRLQKEHNHE 277 6**************************************9998..............4899**************************9 PP FAR1 89 la 90 + SMil_00014153-RA_Salv 278 FE 279 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.2E-17 | 52 | 126 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.7E-16 | 204 | 278 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.522 | 505 | 541 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.8E-8 | 511 | 538 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.6E-7 | 516 | 543 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MNREELGNIM TVRTKPAALV IPKSNGHRED VGQSKMEPHV GLEFDSAEEA QEFYSSYATQ 60 IGFKIRIGQL YRSRVDGAVI SRRFVCSKEG FQTNSRTGCP AFIRVQKVDS GKWVLANIKK 120 EHNHEFEASG ELCPPRIQRK TIPTPRSSSA GGASRTGIRS HEDDSPTGVV DMKRLKKEEM 180 DGMVGPVAEP QKGLEFNSAN EAYKFYYTYA ASAGFRIRIG QLFRSKHDGS ITSRRFVCSK 240 EGHQHPSRVG CGAYMRIQRQ ESGRWVVDRL QKEHNHEFET PTDLSRTVTV ASKGGYREEG 300 SNMLENLDLV ETNGGLSLVK RVSESNISSA WYPLLLEYDY ETCVFQSQTA NEFDSAWDML 360 MEKYNLRENS WFKDMHRTRK SWVPLYLKGT FFAGIPVDGS LKSYFSTLLT SQTPLNEFVV 420 RYEKALEQRR EEERKEDFNS FNLQSILHTK DPIEEQCRRL YTITMFKVFQ KELLECYSYV 480 GMKINVEGAI SRYMVQKCGN GDERKTVAFN ASNLNINCSC KMFEFEGVLC RHALKVLQIM 540 NIRELPSRYI LHRWSKNAKY GILRDADSAG GAQDFKALML WSLREEARNY IEAGAASLER 600 YKLAFEIMQE GRRNLCWQN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071525.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
Swissprot | Q3E7I5 | 1e-117 | FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | A0A103XIS0 | 0.0 | A0A103XIS0_CYNCS; Uncharacterized protein | ||||
TrEMBL | A0A2H5N7E0 | 0.0 | A0A2H5N7E0_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00251.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7347 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 1e-119 | FAR1-related sequence 12 |
Publications ? help Back to Top | |||
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