PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00014148-RA_Salv
Common NameSPL7
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 793aa    MW: 87416.4 Da    PI: 6.7099
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00014148-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.91.1e-36125201177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cqv+gCead+se+k yhrrh+vC  +++a +vl++g ++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  SMil_00014148-RA_Salv 125 RCQVPGCEADISELKGYHRRHRVCLRCANAGSVLLDGDSKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKP 201
                            6***********************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.9E-29120187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.718123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.1E-33124203IPR004333Transcription factor, SBP-box
PfamPF031101.9E-27126200IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MQQNPSSHPT PIPPTEALIP ADDPAASSLF DWSDFLDFNL DEGGLHAAPS LPQSEQEQEQ  60
PGGFDPGQEK PGAVRKRDPR LLCSNFLARV PCACPELDQK LAEEERELPG KKRTRIARGP  120
GGPARCQVPG CEADISELKG YHRRHRVCLR CANAGSVLLD GDSKRYCQQC GKFHILSDFD  180
EGKRSCRRKL ERHNNRRRRK PNDSKEGAEK ESQLIVLADD LSGDDDAGKD GISVNGQIED  240
KELLLESDGQ VSALGSQTLQ SDSVVSLSTS GEPHVEADTQ NPKIKQSPPY CDNKSSFSSA  300
CPAGRVSFKL YDWNPAEFPR RLRLQIFQWL ASMPVELEGY IRPGCTILTA FIAMPKPVWR  360
ELLEEPSLCI KDLVLSPGSL LSGRGPMHVY LNDMIFRITK DASLVHEVKV KDRAPKLHYI  420
HPNCFEAGRP MEFVACGSHL LQPNFRFLIS FAGQYLAYKI RVSSPCEKGD AESADHQLLK  480
IYVPQIDIAL SGPAFVEVEN QSGLSNFIPV LVGDKETCAE MEILQQKSGT PSSSHEREHL  540
SPQPACRVLA SRQVEFNELV LDVAWLLKKP ASEQKLTSSH ILRSNCLLEY LMGKESTVVL  600
EGLCRSLRSA IDNNLVDGDS NSDMRLLQKN IDAAQRRLAP KSHEKVVADT PAPSGDRCSH  660
IPENDTSPFV PSANQVCIKC LDTSQRATRV GYVNDYNVQK LISQGLRSTV RSLLGLVARP  720
PSSLDEEDAT VPLLKDKVIM NVDLQERPRG SCSRSLSTTL STSRLLIVAV MAVGVCFGVC  780
AAVLHPQRVG QIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A9e-42121204184squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186198RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378830.0KF437883.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 7 (SPL7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071504.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A075FEV20.0A0A075FEV2_SALMI; SQUAMOSA promoter binding protein-like 7 (Fragment)
STRINGMigut.N00133.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54072433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Zhang L, et al.
    Genome-wide analysis and molecular dissection of the SPL gene family in Salvia miltiorrhiza.
    J Integr Plant Biol, 2014. 56(1): p. 38-50
    [PMID:24112769]