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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013928-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23027.9 Da PI: 4.6999 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.7 | 5.3e-17 | 47 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr ++ +g+Wv+eIr+p++ ++r++lg++ tae+Aa a++ a+++l+g SMil_00013928-RA_Salv 47 SVYRGVR-CR-SGKWVSEIREPRK---TTRIWLGTYATAEMAAVAYDVAALALKG 96 78****9.55.6*********843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-19 | 47 | 104 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-10 | 47 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.19E-28 | 47 | 105 | No hit | No description |
PROSITE profile | PS51032 | 19.875 | 48 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-28 | 48 | 110 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MECMSDENVN KSQQYSSLNR PNALSPKPSK KKKPSPPSAA ATEPPPSVYR GVRCRSGKWV 60 SEIREPRKTT RIWLGTYATA EMAAVAYDVA ALALKGPEAV INFPAFAPSY PPPASLSAAD 120 IRVAVANAAA TIASADAGGD DPPRPDQLKE SSSSADVYEF IDEEALFDMP KLLVDMAEGM 180 LLSPPRMKTA AEDRGDSPEN YSIDERLWSY PSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-13 | 49 | 104 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076239.2 | 5e-59 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF025 | ||||
Swissprot | Q9FJ90 | 5e-53 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A4D9BG10 | 1e-69 | A0A4D9BG10_SALSN; Uncharacterized protein | ||||
STRING | XP_010278525.1 | 4e-55 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 7e-31 | ERF family protein |
Publications ? help Back to Top | |||
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