PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013842-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 212aa    MW: 23930.7 Da    PI: 10.627
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013842-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-171154346
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           i+n+s r+ ++ kR++g++KK +ELS+LC+++++ i++s+ + +
  SMil_00013842-RA_Salv 11 ISNESERKASYKKRKKGLMKKVSELSTLCGVDACAIVYSQYDAV 54
                           9**************************************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.273150IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-23160IPR002100Transcription factor, MADS-box
CDDcd002663.04E-19285No hitNo description
SuperFamilySSF554553.4E-23296IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTRKKVTLAY ISNESERKAS YKKRKKGLMK KVSELSTLCG VDACAIVYSQ YDAVPEVWPS  60
PLGAQAILAR FRKLSDMDQS RKMVNQESFT RQRIKKAADQ LRRLQKENRC RELEALMFRC  120
ISGAAALDDF SLPDAAEMGW VISQTLRDIN ARMEAVAAAD HRRRQPPPIA MPPPPPPPPD  180
EVAEPHGLGG VVSPWEPGAE PHARRRRRRG RF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLAYISNESERKASYKKRK
22125KKRKK
3203210RRRRRRGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088788.12e-81agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A4D8ZI016e-80A0A4D8ZI01_SALSN; Uncharacterized protein
STRINGPOPTR_0005s00420.12e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-51AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]