PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013647-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 419aa    MW: 44697.1 Da    PI: 7.469
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013647-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.34.5e-15226278658
                            HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                             + r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  ++ ++ +
  SMil_00013647-RA_Salv 226 TATRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSSLLKRLTDISHKYNE 278
                            678**************************************999988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.5E-16221285IPR004827Basic-leucine zipper domain
PfamPF001702.6E-12228276IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.06E-11228275No hitNo description
PROSITE profilePS5021710.208229278IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-10229277No hitNo description
PROSITE patternPS000360229243IPR004827Basic-leucine zipper domain
PfamPF124983.4E-40292408IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
LSSSAASTAQ SKLAAGMNRS ASEWAFQRFI QEASAPDRTT LQSASSSTHQ TVDVAEIKGG  60
SRHHLIGVGV NANQQQPAAA AGGPPPNLSP DSEEYQAFLK SRLELACAAV ALTRGSNVKS  120
QVSAAAAPDN GSQASNSLQL GSHVAHKDSI KLQDKDAGGP VGVPPLPAIA KKYGVQVKST  180
TSGSSGEQSD DDEAEGENES TQNMDPTDAK RMRSYHGGTY IMKLSTATRM LSNRESARRS  240
RRRKQAHLSE LETQVSQLRV ENSSLLKRLT DISHKYNEAA VDNRVLKADV ETLRAKVKMA  300
EETVKRVTGL NPLFQAMSEI STMGMPSFSG SPDPSADAAV PVQDDPEQHY YHAPXSSQAS  360
VQDHRVQNGV AENVQQPDDA AVGPNKMGRT VSMQRVASLE HLQKRIRASS DTQGTGGEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237244RRSRRRKQ
2239244SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091948.11e-172light-inducible protein CPRF2
SwissprotQ990901e-116CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A4D9AS730.0A0A4D9AS73_SALSN; Uncharacterized protein
STRINGXP_009787496.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.24e-63bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]