![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00013647-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 419aa MW: 44697.1 Da PI: 7.469 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.3 | 4.5e-15 | 226 | 278 | 6 | 58 |
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + r+ +NRe+ArrsR+RK+a + eLe+ v +L eN++L k+l ++ ++ + SMil_00013647-RA_Salv 226 TATRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSSLLKRLTDISHKYNE 278 678**************************************999988887765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.5E-16 | 221 | 285 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.6E-12 | 228 | 276 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.06E-11 | 228 | 275 | No hit | No description |
PROSITE profile | PS50217 | 10.208 | 229 | 278 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.4E-10 | 229 | 277 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 229 | 243 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 3.4E-40 | 292 | 408 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
LSSSAASTAQ SKLAAGMNRS ASEWAFQRFI QEASAPDRTT LQSASSSTHQ TVDVAEIKGG 60 SRHHLIGVGV NANQQQPAAA AGGPPPNLSP DSEEYQAFLK SRLELACAAV ALTRGSNVKS 120 QVSAAAAPDN GSQASNSLQL GSHVAHKDSI KLQDKDAGGP VGVPPLPAIA KKYGVQVKST 180 TSGSSGEQSD DDEAEGENES TQNMDPTDAK RMRSYHGGTY IMKLSTATRM LSNRESARRS 240 RRRKQAHLSE LETQVSQLRV ENSSLLKRLT DISHKYNEAA VDNRVLKADV ETLRAKVKMA 300 EETVKRVTGL NPLFQAMSEI STMGMPSFSG SPDPSADAAV PVQDDPEQHY YHAPXSSQAS 360 VQDHRVQNGV AENVQQPDDA AVGPNKMGRT VSMQRVASLE HLQKRIRASS DTQGTGGEQ |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 237 | 244 | RRSRRRKQ |
2 | 239 | 244 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091948.1 | 1e-172 | light-inducible protein CPRF2 | ||||
Swissprot | Q99090 | 1e-116 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A4D9AS73 | 0.0 | A0A4D9AS73_SALSN; Uncharacterized protein | ||||
STRING | XP_009787496.1 | 1e-158 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2934 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28770.2 | 4e-63 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|