PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013639-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 244aa    MW: 26874.8 Da    PI: 10.202
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013639-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-1392136347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +W++eE+ l++ + ++lG+g+W+ I+r + ++Rt  q+ s+ qky
  SMil_00013639-RA_Salv  92 PWSEEEHRLFLIGLEKLGKGNWRGISRNFVTTRTSTQVASHAQKY 136
                            7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577564.88E-5433IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.438623IPR001878Zinc finger, CCHC-type
SMARTSM003430.0079723IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.64884141IPR017930Myb domain
SuperFamilySSF466892.24E-1786142IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-1788140IPR006447Myb domain, plants
SMARTSM007171.5E-889139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-1190136IPR009057Homeodomain-like
PfamPF002499.5E-1192136IPR001005SANT/Myb domain
CDDcd001671.65E-892137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
LKMGVRKCSK CGKTGHNSRT CRNDSSRREN CGQIMRLFGV EVARVASPND GFGLIKTLNF  60
NQMELVSSTD QDSDKLKHVG TLHQPQRKKG IPWSEEEHRL FLIGLEKLGK GNWRGISRNF  120
VTTRTSTQVA SHAQKYFLRQ NNANKNKFTP TVLSMILQRL CSSKFTLQLR AQPCCSAAPG  180
GGGLGTAPGC ALEEACNGNW EVMVSAELYV FIVWGNSTSS LLCIFGNSMA IFFVSSLFPT  240
SGSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400577.12e-41PREDICTED: transcription factor MYB1R1
TrEMBLA0A2G9H7005e-55A0A2G9H700_9LAMI; Uncharacterized protein
STRINGEOY304928e-40(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.19e-37MYB_related family protein