PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00013517-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 40197.9 Da PI: 6.5129 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.2 | 4.6e-51 | 31 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 + pGfrF+Ptdeel+++yLk+k++g++ + evi+evdi+++ePwdLp ++v ++++ew+fFs+r +ky++g++++rat sgyWkatg SMil_00013517-RA_Salv 31 MFPGFRFSPTDEELIQYYLKRKLHGSDDGV-EVIPEVDICRHEPWDLPgQSVIQSDNEWFFFSPRGRKYPNGSQSKRATVSGYWKATG 117 579************************888.99***************777778899******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++v+s +++++g+k+tLvf+ grapkg++t+W+mhey+ SMil_00013517-RA_Salv 118 KERSVKS-GSTQIGTKRTLVFHMGRAPKGQRTEWIMHEYTT 157 *******.999****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-56 | 25 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.949 | 31 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 33 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0033619 | Biological Process | membrane protein proteolysis | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
LFGCISIGCN ISDNDRSICS MEISIAEASS MFPGFRFSPT DEELIQYYLK RKLHGSDDGV 60 EVIPEVDICR HEPWDLPGQS VIQSDNEWFF FSPRGRKYPN GSQSKRATVS GYWKATGKER 120 SVKSGSTQIG TKRTLVFHMG RAPKGQRTEW IMHEYTTSEK SQDAMVVCRL RKNREFHLND 180 SVGEGAVENS APSVSGLVDG AKTAGSCSKD CSSSHNSHSV EQLDTGSESE EKVTNESSHP 240 VSSLNEEDDC YADIMKDDLI KLDDSSLSEN PRPIRQKLPS QGTANRRLRL RRHRMESYGN 300 GREHFGIYEL EKQTSTREIS IENARDSNLI EKSTRIVFLV AVVLISVLIL LLYIRGSSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 30 | 174 | 19 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00280 | DAP | Transfer from AT2G27300 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088938.1 | 1e-142 | NAC domain-containing protein 40 | ||||
Swissprot | Q9XIN7 | 5e-82 | NAC40_ARATH; NAC domain-containing protein 40 | ||||
TrEMBL | A0A2G9GC16 | 1e-138 | A0A2G9GC16_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02423.1.p | 1e-131 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4154 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22290.1 | 1e-75 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
---|---|---|---|
|