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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SMil_00013373-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
LBD |
| Protein Properties |
Length: 145aa MW: 16743.1 Da PI: 6.9388 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00013373-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 103.3 | 2.1e-32 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
aCa+C++l+++C +dC+l pyfp+e++++f++vhk+FG +n++++++ ++e+er++a+++l+ eA++r++d v+Ga+gv ++l+ q
SMil_00013373-RA_Salv 5 ACAVCRHLGKQCDEDCILGPYFPQERTQEFKYVHKVFGIHNLTQIVSCVEEHERPTAIETLIIEAKMRVHDKVHGAYGVESNLRAQWT 92
7*************************************************************************************** PP
DUF260 89 qlkaelallkee 100
++ +el+ll+++
SMil_00013373-RA_Salv 93 NAVEELNLLNHH 104
*******99987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 145 aa
Download sequence Send
to blast |
MDEAACAVCR HLGKQCDEDC ILGPYFPQER TQEFKYVHKV FGIHNLTQIV SCVEEHERPT 60
AIETLIIEAK MRVHDKVHGA YGVESNLRAQ WTNAVEELNL LNHHLRSLRA QLNRENKFAS 120
SSITISLRPS LPNLFNYLRP YVELQ
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 8e-20 | 4 | 105 | 10 | 111 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 8e-20 | 4 | 105 | 10 | 111 | LOB family transfactor Ramosa2.1 |
