PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00013267-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 331aa MW: 37654.1 Da PI: 7.6832

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00013267-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.3	7.7e-50	23	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrFhPt+eelv++yL++kvegk+++l e i+ +d+y+++Pw+Lp ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d SMil_00013267-RA_Salv 23 MPGFRFHPTEEELVDFYLRRKVEGKSFNL-ELITFLDLYRYDPWELPGLAAMGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGAD 109 79************************9.89***********7777899****************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + s++++ +glkktLvfy+g+apkg +t W+m+eyrl SMil_00013267-RA_Salv 110 RIIRSESHRSIGLKKTLVFYSGKAPKGIRTAWIMNEYRL 148 ***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.264	22	170	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-55	22	169	IPR003441	NAC domain
Pfam	PF02365	3.6E-25	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MNNNNPEESN SSNQDEQEQD MVMPGFRFHP TEEELVDFYL RRKVEGKSFN LELITFLDLY 60 RYDPWELPGL AAMGEKEWYF YVPRDRKYRN GDRPNRVTTS GYWKATGADR IIRSESHRSI 120 GLKKTLVFYS GKAPKGIRTA WIMNEYRLPS MKPNAFKRYA EISLCRVYKR AGLEDQHTRG 180 SSSSCRRGST ASSSSDIGSS TTTSLTLPFI NPLASSTFIP LQDDHHTIMQ PNNSSNLTTN 240 IGTPIFDNAL DDLHKLVNLN FSKDVATSSS LPNHVYYPNV IATDFLSYFP TLQPQPPPAT 300 NISSPAAFSD RLMWDWNAIS ESSKDLTNLF K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-57	24	170	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-57	24	170	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-57	24	170	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-57	24	170	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	3e-57	24	170	19	165	NAC domain-containing protein 19
4dul_B	3e-57	24	170	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087598.1	1e-122	NAC domain-containing protein 35
Swissprot	Q9ZVP8	7e-96	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2G9HIS2	1e-123	A0A2G9HIS2_9LAMI; Uncharacterized protein
STRING	Migut.N00873.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3888	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-95	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]