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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013259-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 30929.9 Da PI: 8.7902 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 9.9e-52 | 24 | 148 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL++kve+++++l + ik+v+iyk++PwdLpk+ a+ekewyfF++r kky+++ r+nr+t+sg+Wkatg d+ SMil_00013259-RA_Salv 24 PGFRFHPTDEELVGFYLRRKVEKRPIRL-DLIKHVEIYKFDPWDLPKSNGAGEKEWYFFCRRGKKYKNSLRPNRVTRSGFWKATGIDR 110 9***************************.99***************8888899*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl SMil_00013259-RA_Salv 111 PIYSSRRDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 148 ************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.869 | 22 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-54 | 23 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-26 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEVENMSSPI SCGSKEEEED TELPGFRFHP TDEELVGFYL RRKVEKRPIR LDLIKHVEIY 60 KFDPWDLPKS NGAGEKEWYF FCRRGKKYKN SLRPNRVTRS GFWKATGIDR PIYSSRRDCI 120 GLKKSLVYYR GSAGKGTKTD WMMHEFRLPT SDSKQEAEVW TLCRILKRSA SYRKCVPVPV 180 PVEMKRSASS ETCSLESCDQ NGGSYISFTA PLATHQTSVQ PHFITSSSSS TYTMYSDINE 240 FLRHADWEDL RSVVDSAAAN PTFYSNRY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-48 | 13 | 174 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-48 | 13 | 174 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-48 | 13 | 174 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-48 | 13 | 174 | 5 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-48 | 13 | 174 | 8 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-48 | 13 | 174 | 5 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-48 | 13 | 174 | 5 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003829 | 8e-34 | AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01. | |||
GenBank | AP004314 | 8e-34 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. | |||
GenBank | AP014963 | 8e-34 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 8e-34 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022848324.1 | 1e-118 | transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 3e-88 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A346HE90 | 1e-116 | A0A346HE90_9LAMI; NAC042 transcription factor | ||||
STRING | Migut.M01549.1.p | 1e-114 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 9e-88 | NAC domain containing protein 42 |