PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013179-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 397aa MW: 44898.2 Da PI: 6.3782 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.5 | 2.2e-17 | 35 | 125 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l++s+ + + l lpkkf++ h + ++ +++l de+ ++++ k+++rk++ l++GW++F a++L egD +vF+l++ SMil_00013179-RA_Salv 35 FMKQLLKSHLSGKFYLGLPKKFCDMHL--PSQDDMIILVDENEQEFSAKYSVRKNR----LSGGWRGFSIAHNLLEGDALVFHLIEPC 116 89*********************9994..235669***************777777....************************9988 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v ++r+ SMil_00013179-RA_Salv 117 KF--RVYIVRA 125 88..8888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-22 | 31 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-19 | 31 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.74E-26 | 33 | 124 | No hit | No description |
PROSITE profile | PS50863 | 12.478 | 35 | 126 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.1E-15 | 35 | 125 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-22 | 35 | 126 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MRTTADHHSC FEFNSSSLEQ AKGVQADSLA QFPSFMKQLL KSHLSGKFYL GLPKKFCDMH 60 LPSQDDMIIL VDENEQEFSA KYSVRKNRLS GGWRGFSIAH NLLEGDALVF HLIEPCKFRV 120 YIVRASRLTE DDGIGLQTND FQNGKPTSTL KVEDQMEANA CTGKTARPPY LNWLAMDSHQ 180 GTKKARLNSD CKLEIDQSGK GDYPFSPSVP EGVRYSEPVV FFEDIKCFED FKIQVDGLVL 240 DSQISKNLRV KYFKLCCSQN MSLHGHLIKG LSGKLAVVMI SETISIADAI RSADLATPLH 300 YLECWDKTLK AFEDLGMAVG FLRDRLHKLL NLSHESQVTT ESKRTKRVQA DEEINNLETT 360 SLNVEAFVVS LEAEIEALNL KNEKLDFEFR RIAQVPW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836956.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1 | ||||
TrEMBL | A0A022RBI9 | 1e-178 | A0A022RBI9_ERYGU; Uncharacterized protein | ||||
STRING | Migut.B00331.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3023 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-36 | B3 family protein |