PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00013136-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 316aa    MW: 35469.6 Da    PI: 4.7286
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00013136-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.55.1e-3481002103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            F++k+y+il+d++++ +i w + +nsf+vl++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g
  SMil_00013136-RA_Salv   8 FVMKTYQILSDPTTNGMIAWGRANNSFIVLEPLHFSQTILPLYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRG 86 
                            9********************999*****************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +++ll++i rkk++
  SMil_00013136-RA_Salv  87 QTQLLSNIVRKKQA 100
                            ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-35497IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.39E-32497IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-48497IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-17831IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-28897IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-174658IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404771IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-175971IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQSEIAPFVM KTYQILSDPT TNGMIAWGRA NNSFIVLEPL HFSQTILPLY FKHNNFSSFV  60
RQLNTYGFRK VDPDRWEFAN EWFLRGQTQL LSNIVRKKQA SATTDASFMI KHQADEDDDD  120
DDDDELEVEI AKLRQEQESL GDELESMSRR LQARERRPRQ MMTFLCKVAE DPQILPQIML  180
MNNTNDTHLI TYDTSSSKRS KIMESSSTSS SSSSSGMTIS SSSVKSGEDL DGRISWCGGR  240
SSVDCCVQSS EDERFGMCSV IRQEHHGYAT LSSSSTAGAP LMNGSGGGVC LSYFEDLEMA  300
RQKPAPYPFS LLEGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2439724129Heat shock factor protein 1
5d5v_B2e-2439724129Heat shock factor protein 1
5d5v_D2e-2439724129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287427.12e-93PREDICTED: heat stress transcription factor C-1
SwissprotQ9LV523e-68HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A4D9BJ201e-117A0A4D9BJ20_SALSN; Heat shock transcription factor, other eukaryote
STRINGXP_004287427.17e-93(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]