PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00013041-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18898.7 Da PI: 10.3811 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.8 | 1.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gk y +ss SMil_00013041-RA_Salv 9 KRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPSGKAYQFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 54.7 | 4.2e-19 | 85 | 145 | 13 | 73 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 +e +++e++ L + ie L+ R++ Ge+L+ L +keL+qLe+qL ++++iRskK +l SMil_00013041-RA_Salv 85 SMEVWRNEIEDLSRTIEALEARERNFAGENLSGLGMKELKQLERQLRVGVERIRSKKVKLH 145 5789****************999**********************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.646 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.16E-39 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 2.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.2E-16 | 85 | 146 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.658 | 86 | 166 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MGRGKVELKR IENPTNRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP SGKAYQFSSH 60 EITRTITRYK IELGIAKADD QGFTSMEVWR NEIEDLSRTI EALEARERNF AGENLSGLGM 120 KELKQLERQL RVGVERIRSK KVKLHELEAS TSSIILGSDS ARLFQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 9e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830552.1 | 2e-93 | PREDICTED: MADS-box transcription factor 14-like isoform X1 | ||||
Swissprot | Q6EU39 | 3e-46 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A0A022RSS8 | 5e-92 | A0A022RSS8_ERYGU; Uncharacterized protein | ||||
TrEMBL | A0A4D8ZWS6 | 4e-92 | A0A4D8ZWS6_SALSN; MADS-box transcription factor, plant | ||||
TrEMBL | A0A4D9ANA1 | 2e-92 | A0A4D9ANA1_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.D01274.1.p | 9e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.4 | 2e-46 | MIKC_MADS family protein |