PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012967-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 319aa    MW: 34716.7 Da    PI: 6.9383
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012967-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.58.5e-30127180155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +prl+Wtp+LH+rFv++v++L G ++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  SMil_00012967-RA_Salv 127 RPRLVWTPQLHKRFVDVVAHL-GLKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 180
                            59*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.428122183IPR017930Myb domain
SuperFamilySSF466893.4E-19124184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-30126185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23128180IPR006447Myb domain, plants
PfamPF002491.5E-8130179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGEEVKIDDA ISDWEAGLPS ADDLTPLSQC LIPLELASAF RISPDPPRTA VDVTRASRTT  60
LSSLRAAAPA ANFKPFAAHA DDHAMPDADA DDGSDPKKTR RADPADDPAV DNCTDDQSTA  120
TAKTLKRPRL VWTPQLHKRF VDVVAHLGLK NAVPKTIMQL MNVEGLTREN VASHLQKYRL  180
YVKRMQGLSN EGPSPSDHLF ASTPLPPQSF NESSSAGPSH GNGIANGSHS SVGNGSSANN  240
HMGMPIPMPY PPPPQIMPMQ MVGMAHGHGY HGYEAPHSHH SHHYQQQYGS MMQQQRDWSG  300
NKYNAGYPQH HMTQNNSKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-33127183157Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089505.11e-178transcription factor LUX
RefseqXP_020552586.11e-178transcription factor LUX
RefseqXP_020552587.11e-178transcription factor LUX
TrEMBLA0A4D9C3D41e-176A0A4D9C3D4_SALSN; Two-component response regulator ARR-B family
STRINGMigut.D00884.1.p1e-139(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35802343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.21e-75G2-like family protein