PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012959-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 518aa    MW: 55690.4 Da    PI: 9.5019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012959-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-056485223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           +C+ C+k F r  nL+ H r H
  SMil_00012959-RA_Salv 64 RCEVCNKGFQREQNLQLHRRGH 85
                           7*******************88 PP
2zf-C2H2110.0013139161123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ykC++C+k +  +s+ k H +t+
  SMil_00012959-RA_Salv 139 YKCEKCSKKYAVHSDWKAHSKTC 161
                            9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.59E-76285No hitNo description
PROSITE profilePS5015710.3676385IPR007087Zinc finger, C2H2
SMARTSM003550.0176385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-56585IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355150104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.59E-7134159No hitNo description
SMARTSM0035585139159IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAASSSSAFL SLRDENDKQQ QQPAAAAAAP SNKRRRNQPG NPSKSGRGSN RAIAQDPNGD  60
EPVRCEVCNK GFQREQNLQL HRRGHNLPWK LRQKSTKEVK RKVYLCPEPS CVHHDPARAL  120
GDLTGIKKHY SRKHGEKKYK CEKCSKKYAV HSDWKAHSKT CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AQESARNLNP PSLSSIGSHL LGLSQQDQIN NGGLSSHDIL RLGRPGPQYE  240
TLVSPGGFRP SPRALFLQPN HDDDHQDQAS HAMLPNKSSL QGLMQLPQLH MNNAANTSSN  300
ASAGLFNLSF FPGNNNNASA MDSAAGEDST LFSSGNLMSI AIPSLYSTSH AMQTPSGGGG  360
QMSATALLQK AAQMGSTTSN AGASSSLLKG FGKSPDHHGF YGGNNNNNNN SGNHLHDLMN  420
SIAAAGGSSA ASIFEQAEMG EYRGFHGGNG NGSSNQQSGF SSLEQAGRLT RDFLGVGEIV  480
RSVREQQQSG MDHLSSMDSQ GKTTSHSHTQ PFGGGTFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-34135196364Zinc finger protein JACKDAW
5b3h_F4e-34135196364Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547771.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A4D8YP470.0A0A4D8YP47_SALSN; Uncharacterized protein
STRINGMigut.E00578.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.24e-82C2H2-like zinc finger protein