PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 189aa MW: 20986.1 Da PI: 4.6096

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012942-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.7e-09	4	27	24	48
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia++++ gRt++++k++w+++l SMil_00012942-RA_Salv 4 WSLIAAHLP-GRTDNEIKNYWNSHL 27 *******.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.88	1	31	IPR017930	Myb domain
SuperFamily	SSF46689	2.53E-7	3	32	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-12	4	27	IPR009057	Homeodomain-like
CDD	cd00167	9.99E-7	4	27	No hit	No description
Pfam	PF00249	4.0E-7	4	27	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MTWWSLIAAH LPGRTDNEIK NYWNSHLSRK IHSFRRPNPN FIPPPPSSKK ATSVNRRGSR 60 KRPGHQEDAA VVMPTTPTPE REAAGRIATE ERESGSSISM LGDIVEDLSG LWGPEFEISR 120 VGPGSENGDT GETSFKCNEF GLGETGSGLG VSSEIYENTF SWMLDDDCDE IWDSTHQGLD 180 DVMFSWLLS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF059451	0.0	KF059451.1 Salvia miltiorrhiza MYB-related transcription factor (MYB97) mRNA, complete cds.
GenBank	KF059561	0.0	KF059561.1 Salvia miltiorrhiza MYB-related transcription factor (MYB97) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058990.1	6e-19	myb-related protein Zm38-like
TrEMBL	A0A059PRU9	1e-133	A0A059PRU9_SALMI; MYB-related transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17418	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	1e-13	myb domain protein 111

Publications ? help Back to Top
Li C,Lu S Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. BMC Genomics, 2014. 15: p. 277 [PMID:24725266]