PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012860-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | CO-like | ||||||||
Protein Properties | Length: 403aa MW: 44222.4 Da PI: 5.7792 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.6 | 1.7e-05 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ + fC+++ lC +C + H+ H++ SMil_00012860-RA_Salv 5 CDFCGEQRSIVFCRSDAASLCLSCDCTVHSAnalsrrHSR 44 *************************999955667777765 PP | |||||||
2 | zf-B_box | 21.3 | 5.4e-07 | 46 | 90 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C++++++++ C + + lC++C +H + H+++p+ SMil_00012860-RA_Salv 46 LVCERCNSQPAFVRCIEEKASLCQNCDWMGHVNsnvspaHKRQPV 90 68*****************************77789999998875 PP | |||||||
3 | CCT | 62.1 | 1.8e-21 | 346 | 389 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k+R FeKk+rYesRKa+A+ R RvKGrFvk+ SMil_00012860-RA_Salv 346 RTNAVMRYKEKKKSRMFEKKVRYESRKARADVRRRVKGRFVKAG 389 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.499 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.29E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.2E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.385 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.80E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.86 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.8E-17 | 346 | 388 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.17 | 346 | 388 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGYLCDFCGE QRSIVFCRSD AASLCLSCDC TVHSANALSR RHSRTLVCER CNSQPAFVRC 60 IEEKASLCQN CDWMGHVNSN VSPAHKRQPV NSYSDCPSAS ELSAVWPFLF NSSPVRDAAC 120 EQEMGSMSIT DKRTIDRQDP QEKANIQNES LRVEASSQLN MDLDKSAGWM ESLTPLDQPT 180 ASTSSSMLKA PLSAAKGRAL YEDDGCYDNL NMDEIDLGFD NYDELFGMAL DNPKNIFGND 240 GIFGMKDMST SNCQGASAAE VSSTGGLNPT RPACSNVASA DSVISSKTEP NLCFTKQAHS 300 GLSFSGLTGE TTGADYQDCG VSSMAIVRDP PWYPPGPESS IPSTSRTNAV MRYKEKKKSR 360 MFEKKVRYES RKARADVRRR VKGRFVKAGE TYDYDPLSPS KSY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100551.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100552.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100553.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-127 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A4D8ZM89 | 0.0 | A0A4D8ZM89_SALSN; Uncharacterized protein | ||||
STRING | Migut.M00064.1.p | 1e-172 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-108 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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