PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012643-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 304aa    MW: 32253.1 Da    PI: 8.7108
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012643-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.66.2e-3359115459
            ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                            + YkeC+kNhAa++GghavDGCgEfmp + +   ++aal+CaACgCHRnFHRr++e+
  SMil_00012643-RA_Salv  59 AAYKECMKNHAAAIGGHAVDGCGEFMPPPPQPsPDPAALTCAACGCHRNFHRRDPES 115
                            68*************************98888789******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-2760113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-2961112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.48961112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-1861125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.62E-20173245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-29177246IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-24185241IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDIDLTPTPT PTPTPTSAKS PDDNEIDTPP HTSNGGGGGG ALKHHHHHLP RRRHPPIAAA  60
YKECMKNHAA AIGGHAVDGC GEFMPPPPQP SPDPAALTCA ACGCHRNFHR RDPESPTSAA  120
AITPPFLDFR HPAAPLPKRF SLSLSPSPPP PPPAAAAAPS HVFFAGAEDH HPAPVTPTVE  180
NPVGRKRFRT KFSQDQKEKM RSFSVKLGWK MQKCDEAAVK EFCHEIGVSK GVLKVWMHNN  240
KHTFKTESGG GIANGSVISF EHSGGSGSGG GGVEERKSDR NGNIFVENGN GSVHRFYASS  300
SSPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-211862431875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070997.11e-109zinc-finger homeodomain protein 10
TrEMBLA0A4D8YIB31e-131A0A4D8YIB3_SALSN; Uncharacterized protein
STRINGSolyc05g007580.1.16e-73(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.14e-51zinc finger homeodomain 1