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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012640-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 37407.9 Da PI: 7.2029 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 15 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 + pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLpk+++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+ SMil_00012640-RA_Salv 15 MLPGFRFHPTDEELVGFYLRRKVQHKPLSI-ELIKQLDIYKYDPWDLPKMASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGT 101 579***************************.89***************9889999********************************* PP NAM 89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ + + +glkk+Lvfy+gra +g+ktdW+mhe+rl SMil_00012640-RA_Salv 102 DRPIYSSdggGAKCIGLKKSLVFYRGRAARGTKTDWMMHEFRL 144 ******98766677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-58 | 13 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.01 | 15 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-26 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEQERIESDD NAEVMLPGFR FHPTDEELVG FYLRRKVQHK PLSIELIKQL DIYKYDPWDL 60 PKMASTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG GGAKCIGLKK 120 SLVFYRGRAA RGTKTDWMMH EFRLPSASPK KYLDKIIPAH EAWAICRIFK KASSSAQRAL 180 SLSQSWISPL SDDTTMSFCN DLQPSSFSHL NHQWPSNGMQ QNAIFSAPRD ETTSFHDHEQ 240 RAPKISTNDA SSLLLEMSTS VLGDAGFRRL PEPSDGAAAA ENGGGVNDEE WGMMIRYPSY 300 GFALSSNLVW EYSSPCPSEL STAYSTNNCY T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-55 | 7 | 177 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-55 | 7 | 177 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-55 | 7 | 177 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-55 | 7 | 177 | 8 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-55 | 7 | 177 | 11 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-55 | 7 | 177 | 8 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-55 | 7 | 177 | 8 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071000.1 | 1e-129 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9ZVH0 | 3e-94 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A022Q7D4 | 1e-127 | A0A022Q7D4_ERYGU; Uncharacterized protein | ||||
STRING | Migut.E00095.1.p | 1e-128 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-91 | NAC family protein |
Publications ? help Back to Top | |||
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