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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012569-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | HSF | ||||||||
Protein Properties | Length: 411aa MW: 46535.1 Da PI: 7.2123 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 76.2 | 5.8e-24 | 48 | 106 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++ +d++l+++isw+e+g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+Y SMil_00012569-RA_Salv 48 FLSKTYDLTDDPSLDSIISWEEKGKSFVVWDPVEFARLVLPRNFKHNNFSSFVRQLNTY 106 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.1E-40 | 44 | 197 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.2E-31 | 46 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.54E-23 | 46 | 106 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-26 | 48 | 197 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-12 | 48 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-12 | 86 | 98 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-12 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.2E-31 | 165 | 197 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGAHNIQTPL HRRFSTSTEP ESLPLRPPPS VASFDSPRPL ASPPIPRFLS KTYDLTDDPS 60 LDSIISWEEK GKSFVVWDPV EFARLVLPRN FKHNNFSSFV RQLNTYVGIV TGIIFSLFVR 120 IHYCMFHLAI VYVRFSGDVP IVFKSMLGRS KLICVVKFNY GCIYVQGFRK IDTDKWEFTN 180 GGFVRGQRHL LKTIQRRKSH NPQQQQQQLE GSSNALEGDI KELRRERRLM MEEVMGLQHE 240 QRCTVQHMGV VEEKLEAAET RHKQMISFLA TMLHSQTIPS SSRTMRRFVK HQPQLCNSDP 300 PSLDAQDLIL YTADKGDSVA MNPADQRPIS SPQNVVVENG VPGFLIAEDA GLEAGHPWEG 360 YVSDYDAPHL GVGGEFLDGL GSMQLQGSSG IKNWLDEESP VNYIYMDPSI K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-15 | 39 | 106 | 18 | 87 | Heat shock factor protein 1 |
5d5v_B | 1e-15 | 39 | 106 | 18 | 87 | Heat shock factor protein 1 |
5d5v_D | 1e-15 | 39 | 106 | 18 | 87 | Heat shock factor protein 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9BB98 | 1e-106 | A0A4D9BB98_SALSN; Heat shock transcription factor, other eukaryote |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8727 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 1e-44 | heat shock transcription factor A3 |