PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HD-ZIP

Protein Properties

Length: 186aa MW: 21185 Da PI: 8.4043

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012548-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.7e-20	34	86	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k SMil_00012548-RA_Salv 34 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 86 55699***********************************************9 PP
2	HD-ZIP_I/II	122.5	2e-39	33	123	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k kqlE+ y+aLk+++da+++e+++L++ev +Lr+ SMil_00012548-RA_Salv 33 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEFDAVSREKHKLHQEVLALRA 120 9**************************************************************************************8 PP HD-ZIP_I/II 90 elk 92 lk SMil_00012548-RA_Salv 121 ILK 123 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-21	6	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-20	18	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	28	88	IPR001356	Homeobox domain
SMART	SM00389	3.5E-18	31	92	IPR001356	Homeobox domain
CDD	cd00086	1.24E-16	33	89	No hit	No description
Pfam	PF00046	2.0E-17	34	86	IPR001356	Homeobox domain
PRINTS	PR00031	4.9E-6	59	68	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-6	68	84	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.5E-8	88	122	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MIYSGMEMKQ AMVAEKSNSN SSMSINYGGG DPKKKRLSTE QLESLENSFQ EEIKLDPDRK 60 MKLAKELGLQ PRQIAVWFQN RRARWKGKQL ERLYDALKQE FDAVSREKHK LHQEVLALRA 120 ILKDQVAKKQ VSTDVSGEET VESTSIPSSE KGRGEGNNQM GECNYVLNVE DYSPLIMTPY 180 NWGALP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	RRARWKGKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094442.1	1e-91	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	6e-49	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A4D9C620	1e-105	A0A4D9C620_SALSN; Homeobox-leucine zipper protein
STRING	Migut.J00491.1.p	3e-87	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	3e-51	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]