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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012415-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34961.7 Da PI: 7.9457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.9e-13 | 103 | 150 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l ++ ++G +W++ ++ g+ R++k+c++rw +yl SMil_00012415-RA_Salv 103 KGAWSEEEDNKLRSYILRYGHWNWRLLPKFAGLARCGKSCRLRWVNYL 150 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 5.8e-14 | 156 | 201 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T eE+ l+++++ +lG++ W++ a+ ++ gRt++++k++w+++l SMil_00012415-RA_Salv 156 RGGFTIEEENLIAKLHDELGNK-WSAMAAIIP-GRTDNEIKNFWHTHL 201 7889******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-21 | 95 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.35 | 98 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-27 | 100 | 197 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-9 | 102 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 103 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-7 | 105 | 150 | No hit | No description |
PROSITE profile | PS51294 | 21.35 | 151 | 205 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 154 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-12 | 155 | 203 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-13 | 156 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-7 | 159 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MASSILQLSF FNDCAHRPTL QPLRLPAVGV EFKFLILFSS SELAGLWCYI RRDEVVLPLG 60 KIRQTEEHYR GDNLLAERDS SRLDFLERET MRKPSVDKNG VKKGAWSEEE DNKLRSYILR 120 YGHWNWRLLP KFAGLARCGK SCRLRWVNYL KPGLKRGGFT IEEENLIAKL HDELGNKWSA 180 MAAIIPGRTD NEIKNFWHTH LKKRSKKVPA APASPSPSPS ESKGCEKVIL ESSRGVVWDS 240 EESGGEAEKG ESPIQVEFNE RGSGTRLLDG FLDSFWTHPF LVDTSYTHHH SFSAFMDQED 300 AIYLFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-23 | 103 | 204 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF059426 | 0.0 | KF059426.1 Salvia miltiorrhiza MYB-related transcription factor (MYB72) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027127259.1 | 3e-70 | transcription factor MYB15-like | ||||
TrEMBL | A0A059PRS9 | 1e-158 | A0A059PRS9_SALMI; MYB-related transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12820.1 | 4e-50 | myb domain protein 10 |