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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SMil_00012348-RA_Salv |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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| Family |
C2H2 |
| Protein Properties |
Length: 226aa MW: 25409.7 Da PI: 7.5797 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00012348-RA_Salv | genome | NDCTCM | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.3 | 0.00012 | 6 | 26 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ C k+Fs+ L H+r+H
SMil_00012348-RA_Salv 6 CKLCFKRFSNGKALGAHMRSH 26
********************9 PP
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| 2 | zf-C2H2 | 14.5 | 0.00011 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k+F+++ L +H +H
SMil_00012348-RA_Salv 122 HRCEKCHKVFKSSQGLGSHKASH 144
79*****************9998 PP
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| 3 | zf-C2H2 | 11.2 | 0.0012 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C C++ F++ L H r+H
SMil_00012348-RA_Salv 176 HECALCPRIFKSAQALGGHKRSH 198
78*******************99 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50157 | 10.097 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 3 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| SuperFamily | SSF57667 | 2.4E-8 | 6 | 26 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| Pfam | PF13912 | 3.7E-6 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.4E-8 | 117 | 144 | No hit | No description |
| PROSITE profile | PS50157 | 9.328 | 122 | 144 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.13 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.3E-6 | 122 | 144 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.68E-5 | 172 | 200 | No hit | No description |
| Pfam | PF13912 | 1.4E-7 | 175 | 198 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.27 | 176 | 198 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.203 | 176 | 198 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MGSMDCKLCF KRFSNGKALG AHMRSHYAIL PLPPKPHELT DDKSATYSLR ENPKKSSRLP 60
DPDLLDVHSD SPRFKRPRGD DQEEEVTKAE LEMEEGDVAL CLIMLSRDVW RNNSDDSSKK 120
IHRCEKCHKV FKSSQGLGSH KASHFKRIRN SLQEREGEGE GEGEGEERES VGDQVHECAL 180
CPRIFKSAQA LGGHKRSHFP APKFRRNLVD LNLPAAVGVV NEEILA
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