PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00012297-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 25657 Da PI: 9.6791 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.9 | 1.2e-33 | 23 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrF+Ptd+e+v +yL++k+ +++l++ +vi+e+d++ ++P++Lp +e++ yfF +r+ ++ + r + g+Wk tg+ SMil_00012297-RA_Salv 23 LPPGFRFQPTDQEIVFQYLARKIFSSPLPA-SVIPELDVFAFHPSNLP---GDSERDRYFFGSREVNHG---NVGRG-SGGFWKVTGS 102 79****************************.99***************...3467899*****988765...46664.57******** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++++ + vg+++tLvfy+g++p++++tdW++h y + SMil_00012297-RA_Salv 103 DKRIVCSkRMPIVGIRRTLVFYQGKHPRAVRTDWFVHVYCI 143 ****99734456*************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-41 | 19 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.012 | 23 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-17 | 24 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MAMQVNYHNM NKFNFIRDGA SKLPPGFRFQ PTDQEIVFQY LARKIFSSPL PASVIPELDV 60 FAFHPSNLPG DSERDRYFFG SREVNHGNVG RGSGGFWKVT GSDKRIVCSK RMPIVGIRRT 120 LVFYQGKHPR AVRTDWFVHV YCIALSQNNR LSQGGLNQIG KWVLCHVFSK KRGLKDEVCR 180 QQRYDRFATP EMSDVDSCSS SSSSSASDSS VLSEVSSTSA DDCAASARP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-32 | 23 | 171 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073111.1 | 3e-91 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 3e-50 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A4D8Y7E8 | 4e-95 | A0A4D8Y7E8_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9C471 | 6e-95 | A0A4D9C471_SALSN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011069 | 4e-66 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 9e-52 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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