PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012294-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 741aa    MW: 81025.8 Da    PI: 8.176
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012294-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.33.5e-24146247199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++v
  SMil_00012294-RA_Salv 146 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIV 231
                            89****************************996555555..89********************************************* PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F+  + +++ l+v+++r+
  SMil_00012294-RA_Salv 232 FM--RAENGDLCVGIRRA 247
                            **..4488999****997 PP
2Auxin_resp113.42.2e-37308391183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+++ +FevvY+Prast+eF+vk++ v+ a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  SMil_00012294-RA_Salv 308 AASLAASGHPFEVVYYPRASTPEFCVKASLVKVAMQIRWCSGMRFKMAFETEDSSRISWfMGTISAVQVADPIRWPDSPWRLLQ 391
                            678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-38137250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-29139248IPR015300DNA-binding pseudobarrel domain
CDDcd100177.26E-21145246No hitNo description
SMARTSM010191.3E-21146248IPR003340B3 DNA binding domain
PfamPF023623.0E-22146247IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14146248IPR003340B3 DNA binding domain
PfamPF065079.6E-33308391IPR010525Auxin response factor
PROSITE profilePS5174515.842622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
LLPAMRFCLR NLALGFVAAN DIKLWIEMIT FMESKEKMKE TERCLDSQLW HACAGSMVQM  60
PSVNSKVFYF PQGHSEHSSG NVDFRSCPRT PAYIACRVSS ISFMADPDTD EVFAKMRLAP  120
AGGKDVDDDG AVGISGSENQ EKPTSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD  180
PPVQTILAKD VHGDTWKFRH IYRGTPRRHL LTTGWSTFVN HKKLVAGDSI VFMRAENGDL  240
CVGIRRAKRG IAGGPEISTG WNPTAGNSIV PYGGYSSFLR DDESKLGRSS NGNWIGRGRV  300
KAEDVVQAAS LAASGHPFEV VYYPRASTPE FCVKASLVKV AMQIRWCSGM RFKMAFETED  360
SSRISWFMGT ISAVQVADPI RWPDSPWRLL QVAWDEPDLL QNVKRVSPWL VELVSNMPAI  420
HLSPFSPPRK KMRLPQHSDQ PFDGQIPRPP FSHQLVGSSN PFGCLPNTTP AGMQGARHAQ  480
YGLSLSSLQV NKQLHPGLFP VGFLPLDRVP TGPSSPLIPK AGNNENISCL LTMGNSTQGS  540
NKPNNGKAAP FVLFGTPILP VKHISLSCSS DTVSPARTGN SSSDGNGEKT GNTSDGSGSG  600
LNQNEAPEPS SCEGIQSELL ETGHCKVFME SEDVGRTLDL SLLCSYEQLY RKLADMFGIE  660
ISEMLNRVLY RDAVGRVKKV GDQPFSNFMK TTRRLTILAD SSSDNVEGNF SHRSRAAASI  720
VGVLRDLQAQ LKGWFSVGNE N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-833041232388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367350.0KX036735.1 Salvia miltiorrhiza auxin response factor ARF15 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8T50.0A0A191T8T5_SALMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]