PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00012209-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 237aa    MW: 27436.4 Da    PI: 8.0417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00012209-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-1255128154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkas....................kapskKlsKaeiLekAveYIksL 54 
                            r++ah e+Er+RR+++ + ++ LrellP  +                    ++ ++K s ++   +A  YIk++
  SMil_00012209-RA_Salv  55 RKTAHREIERQRRQEMSTLYASLRELLPLEYikvyicffpfkyyfkealnqSTWQGKRSVSDHMHEAASYIKDM 128
                            799**************************777****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.23E-55283No hitNo description
PROSITE profilePS5088812.51954128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1155147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-955128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-1155145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCFSEMILE QDLTISNEAV LESPQLVTKS SKKRRRTSKS GPKQNEENKV SDELRKTAHR  60
EIERQRRQEM STLYASLREL LPLEYIKVYI CFFPFKYYFK EALNQSTWQG KRSVSDHMHE  120
AASYIKDMEK KIEELQLRRD ELKNASASNT TFDLPNFVTV NCCCDGLEIL INCGVKEGYG  180
FSLSRVIVEL THNGLDVVTC ISNKVNGRFL YKIHTQVNAL AYINLAELQQ RLAYEIN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574450.0KP257445.1 Salvia miltiorrhiza clone 12 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076502.23e-66transcription factor bHLH120-like
TrEMBLA0A0H3YC211e-176A0A0H3YC21_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-36bHLH family protein