PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00012153-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 338aa MW: 37169.3 Da PI: 8.4594

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00012153-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.2e-08	265	313	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 r +W+teEd +l v ++G ++W+ Ia + R ++++ rw +++ SMil_00012153-RA_Salv 265 RRSWSTEEDAKLTASVLKHGERSWANIALLDFkNDRRANELSQRWSNLR 313 678************************9643357999999999998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.157	260	317	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-12	261	317	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.43E-10	262	314	IPR009057	Homeodomain-like
SMART	SM00717	7.8E-7	264	315	IPR001005	SANT/Myb domain
Pfam	PF13921	9.2E-6	268	315	No hit	No description
CDD	cd11660	3.31E-7	268	314	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MVDKSKKGKK GTFGEDDMSS VLARYSMNTV LGLLQEVEQA GGAKIDWHEA VKKSSTGISC 60 AREYQMLWRH LAYGEALTDQ LDDDAEPIDY DSDLEYEVEP SPAVGREASV EAAACVKTKI 120 PINYLYGLEL KPSHKLHNVL VGSLVFNSQC ISLFLTDTHL KPCLLFSVPT IKSMLIFVTV 180 LIASGYPNNS QLPNNSTIEA PLTINIPNTK AACASSDGSH LSDMMRGMNV SIPVSVQKQP 240 LSSGVIGEKR PIALAQMNLP SRRRRRSWST EEDAKLTASV LKHGERSWAN IALLDFKNDR 300 RANELSQRWS NLRKKQGNTK GGTSTQPSET QLAAAHRP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082058.1	1e-110	uncharacterized protein LOC105164926
TrEMBL	A0A4D9APU1	1e-141	A0A4D9APU1_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3434	22	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-45	MYB_related family protein