PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011783-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARF
Protein Properties Length: 504aa    MW: 55850.7 Da    PI: 7.7425
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011783-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.2e-24121222199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f k+lt+sd+++ g +++p+ +ae++         ++ +  t+ ++d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++v
  SMil_00011783-RA_Salv 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILVKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIV 206
                            89****************************996555555..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   + +++ l+v+v+r+
  SMil_00011783-RA_Salv 207 FL--RAENGDLCVGVRRA 222
                            **..4488899****996 PP
2Auxin_resp110.41.8e-36288371183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+++++F+v+Y+Pras++eF v+++ +++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dpvrWp+S+Wr+L+
  SMil_00011783-RA_Salv 288 AATLAANGKPFDVIYYPRASNPEFFVRTSLLRAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPVRWPDSPWRLLQ 371
                            68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-37114224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-29116222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-21120221No hitNo description
SMARTSM010191.3E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253121223IPR003340B3 DNA binding domain
PfamPF023624.9E-22121222IPR003340B3 DNA binding domain
PfamPF065074.7E-31288371IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MITFMESKER SKESERCLDS QLWHACAGSM VQMPPVNSKV FYFPQGHLEH VCGNLDLRNC  60
PRLPAYVPCR VSAVKFMADP ETDEVFAKIR LAPVAGDEVD LDKDGAAEVD GVENRDKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILVKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGVR RAKNGIGGGP QVPPRWSPGG  240
GGPAVPYGGF SMFLREDESK LSRNGGGANN GSLMGKGRRV ETEDVVEAAT LAANGKPFDV  300
IYYPRASNPE FFVRTSLLRA ALQIRWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPV  360
RWPDSPWRLL QVRWDEPDLL QNVKRVNPWS VELVSNLPNI HLSPFSSPHK KLRLLQPPDS  420
PLDGQLPLPA FTGSHHLFGS SYPFGCLTDN APAGMQGARH GQYGITLSDL HFSKLDPDCF  480
HPILLLLGLL IELRSHPALQ LCFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-82839241388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0367330.0KX036733.1 Salvia miltiorrhiza auxin response factor ARF13 (ARF) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8T30.0A0A191T8T3_SALMI; Auxin response factor
STRINGSolyc09g007810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]