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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SMil_00011776-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 255aa MW: 29784.5 Da PI: 8.8264 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00011776-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 98 | 3.8e-31 | 29 | 78 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
SMil_00011776-RA_Salv 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 78
79***********************************************8 PP
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| 2 | K-box | 91.9 | 1.1e-30 | 116 | 203 | 13 | 100 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+ + +qqe++kL+++i+ q+++R++lGe+++s++lk+L+++e+++ek++++iR+kKnell+++ie +qk+e el++en++Lr+k+ e
SMil_00011776-RA_Salv 116 DDQFYQQEATKLRRQIRDCQNTNRQILGEGVSSMQLKDLRNMENKVEKAISRIRTKKNELLFAEIELMQKRELELHNENMYLRAKIGE 203
5699*********************************************************************************965 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 8.0E-40 | 21 | 80 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.955 | 21 | 81 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.45E-44 | 22 | 98 | No hit | No description |
| SuperFamily | SSF55455 | 9.16E-33 | 22 | 95 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.6E-33 | 23 | 43 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 23 | 77 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.1E-26 | 30 | 77 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.6E-33 | 43 | 58 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.6E-33 | 58 | 79 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.3E-25 | 116 | 201 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.525 | 117 | 207 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0090376 | Biological Process | seed trichome differentiation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
LAGSMEFPNQ ESESSNSLRK NGRGKIQIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD 60
AEVALVVFSS RGRLYEYANN SVRATIDRYK KATVDSSNTM STSEANTQAI YSQFVDDQFY 120
QQEATKLRRQ IRDCQNTNRQ ILGEGVSSMQ LKDLRNMENK VEKAISRIRT KKNELLFAEI 180
ELMQKRELEL HNENMYLRAK IGESERAQQQ MNMMNQEYEQ NSHNYDVRNF LPVNLLQPEH 240
DHHYSCQDQT PLQLV
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1egw_A | 2e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 2e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 2e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 2e-20 | 22 | 89 | 1 | 68 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 3kov_A | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_B | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_I | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3kov_J | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_A | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_B | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_C | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_D | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_I | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| 3p57_J | 3e-20 | 22 | 89 | 1 | 68 | Myocyte-specific enhancer factor 2A |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
| Publications
? help Back to Top |
- Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
Plant Mol. Biol., 2001. 45(5): p. 541-53
[PMID:11414613] - Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751]
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