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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SMil_00011705-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
C3H |
| Protein Properties |
Length: 285aa MW: 31400 Da PI: 8.4344 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00011705-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.4 | 2e-12 | 196 | 221 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
SMil_00011705-RA_Salv 196 YQPDICKDYKETGYCGYGDSCKFMHD 221
67789********************7 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MAGEEADGGS AGAATGEGSN VCSFFRKPSK GKNIRKRTAV EEAEGEDEDS NSGSSVVYNK 60
KKQAAADNKL LFSSGSLKTS KGSEPEKQKD SVFEYESSRV IQVQNDSKAT ATLETETDFS 120
RDARAIRERV LKQAEAALKG KNKSSGDEKL YKGLHGYTDY KAGFRREQTV ASEKAGGAHG 180
PLRASAHIRV SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ LEKEWDEKEK 240
ARTRKMAMGM KGGEDDESPA RVTRTMIMLC HLLASFVGSL LWMLS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5z56_M | 9e-39 | 20 | 237 | 13 | 238 | RING finger protein 113A |
| 5z58_M | 9e-39 | 20 | 237 | 13 | 238 | RING finger protein 113A |
| 6ff4_t | 9e-39 | 20 | 237 | 13 | 238 | RING finger protein 113A |
| 6ff7_t | 9e-39 | 20 | 237 | 13 | 238 | RING finger protein 113A |
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