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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00011590-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 385aa MW: 42458.3 Da PI: 9.1076 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 243 | 298 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGG++ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ SMil_00011590-RA_Salv 243 KQRRCWSPELHRRFVSALQQLGGAQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 298 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.359 | 240 | 300 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-18 | 240 | 301 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 242 | 301 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 243 | 298 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 245 | 296 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MGSQGLTLDC SPPSPKSTGD FLAQVSRMDS VTQKISKLDD YVNRLQDEMK KIDAFKRELP 60 LCMILLNDAI ARMKEEKMRC QSSNCEPILE EFIPLKKSSS DKDEKTGDVK ETDIVNRREK 120 MNWMSSVQLW NTDSNKKRKE EAVDRAAMGE LFRSGKSSRA AGKALSPFKG CSNFLAMTVG 180 KEGRDEFPGA PSLSLRTPEI KNSTEEIFRN NFSSKSSSSR SGSSCGTNSQ SSFKADSQQT 240 GRKQRRCWSP ELHRRFVSAL QQLGGAQAAT PKQIRELMQV DGLTNDEVKS HLQKYRLHTR 300 RVPPTANTEG GGGVLGGLWA SQEQCGESSK PSNSHSSSPQ GPLHLAGSSR GTSVTGGDSV 360 EDEDEDNKSE SRSWKSRSSK RESDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-13 | 243 | 296 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 243 | 296 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 243 | 296 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 243 | 296 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092742.1 | 1e-180 | myb family transcription factor EFM | ||||
TrEMBL | A0A4D9BXT9 | 0.0 | A0A4D9BXT9_SALSN; Uncharacterized protein | ||||
STRING | XP_009625720.1 | 1e-120 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4361 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 4e-46 | G2-like family protein |