PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00011578-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 309aa    MW: 34841.1 Da    PI: 8.2724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00011578-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12140187355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  SMil_00011578-RA_Salv 140 QDHILAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYMKQLQ 187
                            57999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.094137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-17141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-18141200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.76E-13142191No hitNo description
SMARTSM003536.0E-15143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.26E-4240308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEISTFRNIA DFGMDDPLFF QQWQVDPMED FSSISCAFSE GFHQSYTQQP LLDFKRPAEA  60
SPAGESRPSK QLRTSNWCKQ ERMSNSPPPT SPIVGVVRPL KEEAWFSPST LTDNQSSNYV  120
LKPCQGIKRV TPNTKLSQAQ DHILAERKRR EKLSQRFIAL SALVPGLKKM DKASVLGDAI  180
KYMKQLQEKV KALEEKAKKT TAVESVVLVK KYQVCDLDSS TDLCESLPEI EARFCEKDVL  240
ISIHCEKRKG VLEKIVAEIE KKLHLSVVNS SVMTFGDSAL NITIIAQRDD ESSLDMKELV  300
KNLRGALRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14141190857Transcription factor MYC2
5gnj_B1e-14141190857Transcription factor MYC2
5gnj_E1e-14141190857Transcription factor MYC2
5gnj_F1e-14141190857Transcription factor MYC2
5gnj_G1e-14141190857Transcription factor MYC2
5gnj_I1e-14141190857Transcription factor MYC2
5gnj_M1e-14141190857Transcription factor MYC2
5gnj_N1e-14141190857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150ERKRRE
2146151RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574390.0KP257439.1 Salvia miltiorrhiza clone 6 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088147.11e-135transcription factor bHLH18-like
SwissprotQ9T0721e-56BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A0H3YBQ30.0A0A0H3YBQ3_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_006486799.11e-101(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-49bHLH family protein